Energy and Structure Analysis Commands for Testing Purposes

Command	Purpose
test.Gradient	The Gradient command tests the analytic energy gradient against one computed using finite-differences of the potential energy.
test.LambdaGradient	The LambdaGradient command tests the analytic thermodynamic path parameterized by Lambda numerically.
test.PhGradient	The PhGradient command tests the analytic energy gradient against one computed using finite-differences of the potential energy for a constant pH simulation.
test.PrmToProperty	The PrmToProperty command converts a TINKER *.prm file to Java properties.
test.ReorderAtoms	Reorder the atoms of an XYZ file.
test.SaveAsConstantPhPDB	THe SaveAsConstantPhPDB command saves a PDB file that includes all titrating tautomer hydrogen atoms.