Utility Commands

Command	Purpose
Biotype	The Biotype command prints a lookup table from PDB atom names to force field atom types.
Cart2Frac	The Cart2Frac command converts Cartesian coordinates to fractional coordinates.
ChainBreaks	The ChainBreaks command fixes chain breaks in a PDB file.
ImportCIF	The ImportCIF command converts a CIF file to an XYZ file (including atom types) or a PDB.
Fasta	The Fasta command outputs a sub-sequence from a FASTA file.
Frac2Cart	The Frac2Cart command converts fractional coordinates to Cartesian coordinates.
MoveIntoUnitCell	The MoveIntoUnitCell command moves the center of mass of each molecule into the unit cell.
PrepareSpaceGroups	The PrepareSpaceGroups command creates sub-directories for the selected space groups.
SaveAsP1	The SaveAsP1 command generates a P1 unit cell from an asymmetric unit.
SaveAsPDB	The SaveAsPDB command converts and input XYZ file to PDB format.
SaveAsXYZ	The SaveAsXYZ command converts an input PDB file to XYZ format.
SaveRotamers	The SaveRotamers command saves out rotamers.
XYZtoQE	The XYZtoQE command creates Quantum Espresso input files based on an XYZ file.