Synopsis

Density [-hpV] [-f=all frames] [-F=XYZ] [-s=1] [--st=1] file

Description

Calculate the mean system density for single topology systems.

Options

-f, --final=all frames

Last frame to evaluate (1-indexed); values less than 1 evaluate to end of trajectory.

-F, --fileFormat=XYZ

Choose file type to write [PDB/XYZ].

-h, --help

Print command help and exit.

-p, --printout

Print out a file with density adjusted to match mean calculated density.

-s, --start=1

First frame to evaluate (1-indexed).

--st, --stride=1

Stride: evaluate density every N frames. Must be positive.

-V, --version

Print the Force Field X version and exit.

Arguments

file

An atomic coordinate file in PDB or XYZ format.