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Real Space Refinement

Optimize an atomic resolution structure against real space data (i.e. X-ray Diffraction or CryoEM Map).

Command Purpose
realspace.Anneal Apply simulated annealing using a real space objective function.
realspace.Dynamics Run Dynamics simulations using a real space objective function.
realspace.ManyBody Globally optimize the side-chains of a protein using a real space objective function.
realspace.Minimize Minimize using a real space objective function.