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compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• edu.uiowa.eng.ffx:numerics:jar:1.0.0-beta

  Numerics
  Description: The Numerics module includes support for FFTs, limited memory BFGS optimization, b-Splines, special functions, and multipole tensor recursions. URL: https://ffx.biochem.uiowa.edu/modules/numerics Project Licenses: GPL version 3 with Linking Exception

  • org.apache.commons:commons-math3:jar:3.6.1 (compile)

    Apache Commons Math
    Description: The Apache Commons Math project is a library of lightweight, self-contained mathematics and statistics components addressing the most common practical problems not immediately available in the Java programming language or commons-lang. URL: http://commons.apache.org/proper/commons-math/ Project Licenses: Apache License, Version 2.0

  • commons-io:commons-io:jar:2.13.0 (compile)

    Apache Commons IO
    Description: The Apache Commons IO library contains utility classes, stream implementations, file filters, file comparators, endian transformation classes, and much more. URL: https://commons.apache.org/proper/commons-io/ Project Licenses: Apache-2.0

  • edu.uiowa.eng.ffx:pj:jar:1.0.1 (compile)

    Parallel Java
    Description: Parallel Java supports both shared memory and message passing parallelization. URL: https://ffx.biochem.uiowa.edu/modules/pj Project Licenses: GPL version 3 with Linking Exception

  • org.jogamp:jogamp-fat:jar:2.5.0 (compile)

    jogamp-fat
    Description: There is currently no description associated with this project. Project Licenses: GNU Lesser General Public License

  • junit:junit:jar:4.13.2 (test)

    JUnit
    Description: JUnit is a unit testing framework for Java, created by Erich Gamma and Kent Beck. URL: http://junit.org Project Licenses: Eclipse Public License 1.0

    • org.hamcrest:hamcrest-core:jar:1.3 (test)

      Hamcrest Core
      Description: This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations. URL: https://github.com/hamcrest/JavaHamcrest/hamcrest-core Project Licenses: New BSD License

  • tornado:tornado-api:jar:0.15.2 (compile)

    tornado-api
    Description: POM was created from install:install-file Project Licenses: No licenses are defined for this project.

  • edu.uiowa.eng.ffx:utilities:jar:1.0.0-beta (compile)

    Utilities
    Description: The Utilities module includes support for byte-swapping, keywords and Hybrid36. URL: https://ffx.biochem.uiowa.edu/modules/utilities Project Licenses: GPL version 3 with Linking Exception

    • info.picocli:picocli:jar:4.7.5 (compile)

      picocli
      Description: Java command line parser with both an annotations API and a programmatic API. Usage help with ANSI styles and colors. Autocomplete. Nested subcommands. Easily included as source to avoid adding a dependency. URL: https://picocli.info Project Licenses: The Apache Software License, version 2.0

    • org.apache.commons:commons-configuration2:jar:2.9.0 (compile)

      Apache Commons Configuration
      Description: Tools to assist in the reading of configuration/preferences files in various formats URL: https://commons.apache.org/proper/commons-configuration/ Project Licenses: Apache-2.0

      • org.apache.commons:commons-lang3:jar:3.12.0 (compile)

        Apache Commons Lang
        Description: Apache Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: https://commons.apache.org/proper/commons-lang/ Project Licenses: Apache License, Version 2.0

      • org.apache.commons:commons-text:jar:1.10.0 (compile)

        Apache Commons Text
        Description: Apache Commons Text is a library focused on algorithms working on strings. URL: https://commons.apache.org/proper/commons-text Project Licenses: Apache License, Version 2.0

      • commons-logging:commons-logging:jar:1.2 (compile)

        Apache Commons Logging
        Description: Apache Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/proper/commons-logging/ Project Licenses: The Apache Software License, Version 2.0

    • org.antlr:antlr4:jar:4.13.1 (compile)

      ANTLR 4 Tool
      Description: The ANTLR 4 grammar compiler. URL: http://www.antlr.org Project Licenses: BSD-3-Clause

      • org.antlr:antlr4-runtime:jar:4.13.1 (compile)

        ANTLR 4 Runtime
        Description: The ANTLR 4 Runtime URL: https://www.antlr.org/antlr4-runtime/ Project Licenses: BSD-3-Clause

      • org.antlr:antlr-runtime:jar:3.5.3 (compile)

        ANTLR 3 Runtime
        Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://www.antlr.org Project Licenses: BSD licence

      • org.antlr:ST4:jar:4.3.4 (compile)

        StringTemplate 4

        Description: StringTemplate is a java template engine for generating source code, web pages, emails, or any other formatted text output. StringTemplate is particularly good at multi-targeted code generators, multiple site skins, and internationalization/localization. It evolved over years of effort developing jGuru.com. StringTemplate also powers the ANTLR 3 and 4 code generator. Its distinguishing characteristic is that unlike other engines, it strictly enforces model-view separation. Strict separation makes websites and code generators more flexible and maintainable; it also provides an excellent defense against malicious template authors. URL: http://nexus.sonatype.org/oss-repository-hosting.html/ST4 Project Licenses: The BSD License

      • org.abego.treelayout:org.abego.treelayout.core:jar:1.0.3 (compile)

        abego TreeLayout Core
        Description: Efficient and customizable TreeLayout Algorithm in Java. URL: http://treelayout.sourceforge.net Project Licenses: BSD 3-Clause "New" or "Revised" License (BSD-3-Clause)

      • com.ibm.icu:icu4j:jar:72.1 (compile)

        ICU4J
        Description: International Component for Unicode for Java (ICU4J) is a mature, widely used Java library providing Unicode and Globalization support URL: https://icu.unicode.org/ Project Licenses: Unicode/ICU License

  • org.apache.groovy:groovy-all:pom:4.0.15 (compile)

    Apache Groovy
    Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-ant:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant:jar:1.10.14 (compile)

        Apache Ant Core
        Description: master POM URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant-junit:jar:1.10.14 (compile)

        Apache Ant + JUnit
        Description: contains the junit and junirreport tasks URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant-launcher:jar:1.10.14 (compile)

        Apache Ant Launcher
        Description: master POM URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant-antlr:jar:1.10.14 (compile)

        Apache Ant + ANTLR
        Description: antlr specific task. The implementation forks a java process, therefore the antlr jar file is only needed at runtime URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-cli-picocli:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-console:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • com.github.javaparser:javaparser-core:jar:3.25.5 (compile)

        javaparser-core
        Description: The core parser functionality. This may be all you need. URL: https://github.com/javaparser/javaparser-core Project Licenses: GNU Lesser General Public License, Apache License, Version 2.0

      • org.ow2.asm:asm-util:jar:9.5 (compile)

        asm-util
        Description: Utilities for ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

        • org.ow2.asm:asm:jar:9.5 (compile)

          asm
          Description: ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

        • org.ow2.asm:asm-tree:jar:9.5 (compile)

          asm-tree
          Description: Tree API of ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

        • org.ow2.asm:asm-analysis:jar:9.5 (compile)

          asm-analysis
          Description: Static code analysis API of ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

      • org.apache.ivy:ivy:jar:2.5.2 (compile)

        Apache Ivy

        Description: The Apache Software Foundation provides support for the Apache community of open-source software projects. The Apache projects are characterized by a collaborative, consensus based development process, an open and pragmatic software license, and a desire to create high quality software that leads the way in its field. We consider ourselves not simply a group of projects sharing a server, but rather a community of developers and users. URL: http://ant.apache.org/ivy/ Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-datetime:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-docgenerator:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • com.thoughtworks.qdox:qdox:jar:1.12.1 (compile)

        QDox
        Description: QDox is a high speed, small footprint parser for extracting class/interface/method definitions from source files complete with JavaDoc @tags. It is designed to be used by active code generators or documentation tools. URL: http://qdox.codehaus.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-groovydoc:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-groovysh:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • jline:jline:jar:2.14.6 (compile)

        JLine
        Description: Sonatype helps open source projects to set up Maven repositories on https://oss.sonatype.org/ URL: http://nexus.sonatype.org/oss-repository-hosting.html/jline Project Licenses: The BSD License

    • org.apache.groovy:groovy-jmx:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-json:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-jsr223:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-macro:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-nio:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-servlet:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-sql:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-swing:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-templates:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-test:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-test-junit5:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • org.junit.jupiter:junit-jupiter-api:jar:5.10.0 (compile)

        JUnit Jupiter API
        Description: Module "junit-jupiter-api" of JUnit 5. URL: https://junit.org/junit5/ Project Licenses: Eclipse Public License v2.0

        • org.opentest4j:opentest4j:jar:1.3.0 (compile)

          org.opentest4j:opentest4j
          Description: Open Test Alliance for the JVM URL: https://github.com/ota4j-team/opentest4j Project Licenses: The Apache License, Version 2.0

      • org.junit.platform:junit-platform-launcher:jar:1.10.0 (compile)

        JUnit Platform Launcher
        Description: Module "junit-platform-launcher" of JUnit 5. URL: https://junit.org/junit5/ Project Licenses: Eclipse Public License v2.0

        • org.junit.platform:junit-platform-engine:jar:1.10.0 (compile)

          JUnit Platform Engine API
          Description: Module "junit-platform-engine" of JUnit 5. URL: https://junit.org/junit5/ Project Licenses: Eclipse Public License v2.0

          • org.junit.platform:junit-platform-commons:jar:1.10.0 (compile)

            JUnit Platform Commons
            Description: Module "junit-platform-commons" of JUnit 5. URL: https://junit.org/junit5/ Project Licenses: Eclipse Public License v2.0

      • org.junit.jupiter:junit-jupiter-engine:jar:5.10.0 (compile)

        JUnit Jupiter Engine
        Description: Module "junit-jupiter-engine" of JUnit 5. URL: https://junit.org/junit5/ Project Licenses: Eclipse Public License v2.0

    • org.apache.groovy:groovy-xml:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-yaml:jar:4.0.15 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:jar:2.15.2 (compile)

        Jackson-dataformat-YAML
        Description: Support for reading and writing YAML-encoded data via Jackson abstractions. URL: https://github.com/FasterXML/jackson-dataformats-text Project Licenses: The Apache Software License, Version 2.0

        • org.yaml:snakeyaml:jar:2.0 (compile)

          SnakeYAML
          Description: YAML 1.1 parser and emitter for Java URL: https://bitbucket.org/snakeyaml/snakeyaml Project Licenses: Apache License, Version 2.0

        • com.fasterxml.jackson.core:jackson-core:jar:2.15.2 (compile)

          Jackson-core
          Description: Core Jackson processing abstractions (aka Streaming API), implementation for JSON URL: https://github.com/FasterXML/jackson-core Project Licenses: The Apache Software License, Version 2.0

      • com.fasterxml.jackson.core:jackson-databind:jar:2.15.2 (compile)

        jackson-databind
        Description: General data-binding functionality for Jackson: works on core streaming API URL: https://github.com/FasterXML/jackson Project Licenses: The Apache Software License, Version 2.0

        • com.fasterxml.jackson.core:jackson-annotations:jar:2.15.2 (compile)

          Jackson-annotations
          Description: Core annotations used for value types, used by Jackson data binding package. URL: https://github.com/FasterXML/jackson Project Licenses: The Apache Software License, Version 2.0

  • javax.xml.bind:jaxb-api:jar:2.4.0-b180830.0359 (compile)

    jaxb-api
    Description: JAXB (JSR 222) API URL: https://github.com/javaee/jaxb-spec/jaxb-api Project Licenses: CDDL 1.1, GPL2 w/ CPE

    • javax.activation:javax.activation-api:jar:1.2.0 (compile)

      JavaBeans Activation Framework API jar
      Description: JavaBeans Activation Framework API jar URL: http://java.net/all/javax.activation-api/ Project Licenses: CDDL/GPLv2+CE

  • com.google.code.findbugs:jsr305:jar:3.0.2 (compile)

    FindBugs-jsr305
    Description: JSR305 Annotations for Findbugs URL: http://findbugs.sourceforge.net/ Project Licenses: The Apache Software License, Version 2.0