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Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
com.google.code.findbugs jsr305 3.0.2 jar The Apache Software License, Version 2.0
edu.uiowa.eng.ffx pj 1.0.1 jar GPL version 3 with Linking Exception
edu.uiowa.eng.ffx utilities 1.0.0-beta jar GPL version 3 with Linking Exception
javax.xml.bind jaxb-api 2.4.0-b180830.0359 jar CDDL 1.1GPL2 w/ CPE
org.apache.commons commons-io 2.6 jar Apache License, Version 2.0
org.apache.commons commons-math3 3.6.1 jar Apache License, Version 2.0
org.apache.groovy groovy-all 4.0.3 pom The Apache Software License, Version 2.0
org.jogamp jogamp-fat 2.4.0.1 jar GNU Lesser General Public License
tornado tornado-api 0.6 jar -

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
junit junit 4.13.2 jar Eclipse Public License 1.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
com.fasterxml.jackson.core jackson-annotations 2.13.3 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-core 2.13.3 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-databind 2.13.3 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.dataformat jackson-dataformat-yaml 2.13.3 jar The Apache Software License, Version 2.0
com.github.javaparser javaparser-core 3.24.2 jar GNU Lesser General Public LicenseApache License, Version 2.0
com.thoughtworks.qdox qdox 1.12.1 jar The Apache Software License, Version 2.0
commons-logging commons-logging 1.2 jar The Apache Software License, Version 2.0
info.picocli picocli 4.6.3 jar The Apache Software License, version 2.0
javax.activation javax.activation-api 1.2.0 jar CDDL/GPLv2+CE
jline jline 2.14.6 jar The BSD License
org.abego.treelayout org.abego.treelayout.core 1.0.3 jar BSD 3-Clause "New" or "Revised" License (BSD-3-Clause)
org.apache.ant ant 1.10.12 jar The Apache Software License, Version 2.0
org.apache.ant ant-antlr 1.10.12 jar The Apache Software License, Version 2.0
org.apache.ant ant-junit 1.10.12 jar The Apache Software License, Version 2.0
org.apache.ant ant-launcher 1.10.12 jar The Apache Software License, Version 2.0
org.apache.commons commons-configuration2 2.8.0 jar Apache License, Version 2.0
org.apache.commons commons-lang3 3.12.0 jar Apache License, Version 2.0
org.apache.commons commons-text 1.9 jar Apache License, Version 2.0
org.apache.groovy groovy 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-ant 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-cli-picocli 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-console 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-datetime 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-docgenerator 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-groovydoc 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-groovysh 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-jmx 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-json 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-jsr223 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-macro 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-nio 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-servlet 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-sql 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-swing 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-templates 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-test 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-test-junit5 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-xml 4.0.3 jar The Apache Software License, Version 2.0
org.apache.groovy groovy-yaml 4.0.3 jar The Apache Software License, Version 2.0
org.apache.ivy ivy 2.5.0 jar The Apache Software License, Version 2.0
org.junit.jupiter junit-jupiter-api 5.8.2 jar Eclipse Public License v2.0
org.junit.jupiter junit-jupiter-engine 5.8.2 jar Eclipse Public License v2.0
org.junit.platform junit-platform-commons 1.8.2 jar Eclipse Public License v2.0
org.junit.platform junit-platform-engine 1.8.2 jar Eclipse Public License v2.0
org.junit.platform junit-platform-launcher 1.8.2 jar Eclipse Public License v2.0
org.opentest4j opentest4j 1.2.0 jar The Apache License, Version 2.0
org.ow2.asm asm 9.3 jar BSD-3-Clause
org.ow2.asm asm-analysis 9.3 jar BSD-3-Clause
org.ow2.asm asm-tree 9.3 jar BSD-3-Clause
org.ow2.asm asm-util 9.3 jar BSD-3-Clause
org.yaml snakeyaml 1.30 jar Apache License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
org.hamcrest hamcrest-core 1.3 jar New BSD License

Project Dependency Graph

Dependency Tree

Licenses

CDDL 1.1: jaxb-api

The Apache Software License, version 2.0: picocli

GPL version 3 with Linking Exception: Numerics, Parallel Java, Utilities

Eclipse Public License 1.0: JUnit

The BSD License: JLine

The Apache License, Version 2.0: org.opentest4j:opentest4j

BSD-3-Clause: asm, asm-analysis, asm-tree, asm-util

Eclipse Public License v2.0: JUnit Jupiter API, JUnit Jupiter Engine, JUnit Platform Commons, JUnit Platform Engine API, JUnit Platform Launcher

GPL2 w/ CPE: jaxb-api

GNU Lesser General Public License: javaparser-core, jogamp-fat

New BSD License: Hamcrest Core

BSD 3-Clause "New" or "Revised" License (BSD-3-Clause): abego TreeLayout Core

CDDL/GPLv2+CE: JavaBeans Activation Framework API jar

Unknown: tornado-api

Apache License, Version 2.0: Apache Commons Configuration, Apache Commons IO, Apache Commons Lang, Apache Commons Math, Apache Commons Text, SnakeYAML, javaparser-core

The Apache Software License, Version 2.0: Apache Ant + ANTLR, Apache Ant + JUnit, Apache Ant Core, Apache Ant Launcher, Apache Commons Logging, Apache Groovy, Apache Ivy, FindBugs-jsr305, Jackson-annotations, Jackson-core, Jackson-dataformat-YAML, QDox, jackson-databind