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Energy and Structure Analysis
Optimization, Superposition, MD and Thermodynamics
Real-Space Refinement
X-ray and Neutron Refinement
Utilities
Properties
Electrostatics Functional Form
Energy Unit Conversion
Implicit Solvent
Local Geometry Functional Form
Non-Bonded Cutoff
Particle-Mesh Ewald
Potential Function Parameter
Potential Function Selection
Unit Cell and Space Group
Van Der Waals Functional Form
Structural Refinement
Examples
Input Files for FFX
Convert File Format
GPU Accelerated Side-Chain Optimization
Side-Chain Optimization and Mutation via Many-Body DEE
Organic Crystal Thermodynamics
AMOEBA-assisted X-ray Refinement
Thermodynamic Polymorph Search
GPU Accelerated MC-OST Solvation Free Energy
Parallelization
License
FFX Team
Modules
Modules
Algorithms
Crystal
Experiment
Numerics
OpenMM Wrappers
Parallel Java
Potential
User Interfaces
Utilities
Algorithms
Introduction
Examples
Force Field X
Sustainable
Software for Molecular Biophysics
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Algorithms Module
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Last Published: Sep 21 2023
Version: 1.0.0-beta
Overview
Welcome
Recent Work
Download
Install
Source Code
Publications
Collaborations
Manual
Commands
Properties
Examples
Parallelization
License
FFX Team
Modules
Modules
Algorithms
Crystal
Experiment
Numerics
OpenMM Wrappers
Parallel Java
Potential
User Interfaces
Utilities
Algorithms
Introduction
Examples
Introduction
The Algorithms module includes support for:
Local optimization
Molecular dynamics
Global optimization via simulated annealing
