compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

Dependency Tree

• edu.uiowa.eng.ffx:forcefieldx:pom:1.0.0

  Force Field X
  Description: Polyglot Software for Molecular Biophysics URL: https://ffx.biochem.uiowa.edu Project Licenses: GPL version 3 with Classpath Exception

  • org.apache.groovy:groovy-all:pom:5.0.2 (compile)

    Apache Groovy
    Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-ant:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant:jar:1.10.15 (compile)

        Apache Ant Core
        Description: master POM URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant-junit:jar:1.10.15 (compile)

        Apache Ant + JUnit
        Description: contains the junit and junirreport tasks URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant-launcher:jar:1.10.15 (compile)

        Apache Ant Launcher
        Description: master POM URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

      • org.apache.ant:ant-antlr:jar:1.10.15 (compile)

        Apache Ant + ANTLR
        Description: antlr specific task. The implementation forks a java process, therefore the antlr jar file is only needed at runtime URL: https://ant.apache.org/ Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-cli-picocli:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • info.picocli:picocli:jar:4.7.7 (compile)

        picocli
        Description: Java command line parser with both an annotations API and a programmatic API. Usage help with ANSI styles and colors. Autocomplete. Nested subcommands. Easily included as source to avoid adding a dependency. URL: https://picocli.info Project Licenses: The Apache Software License, version 2.0

    • org.apache.groovy:groovy-console:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • com.github.javaparser:javaparser-core:jar:3.27.1 (compile)

        com.github.javaparser:javaparser-core
        Description: The core parser functionality. This may be all you need. URL: https://github.com/javaparser Project Licenses: GNU Lesser General Public License, Apache License, Version 2.0

      • org.ow2.asm:asm-util:jar:9.9 (compile)

        asm-util
        Description: Utilities for ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

        • org.ow2.asm:asm:jar:9.9 (compile)

          asm
          Description: ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

        • org.ow2.asm:asm-tree:jar:9.9 (compile)

          asm-tree
          Description: Tree API of ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

        • org.ow2.asm:asm-analysis:jar:9.9 (compile)

          asm-analysis
          Description: Static code analysis API of ASM, a very small and fast Java bytecode manipulation framework URL: http://asm.ow2.io/ Project Licenses: BSD-3-Clause

      • org.apache.ivy:ivy:jar:2.5.3 (compile)

        Apache Ivy

        Description: The Apache Software Foundation provides support for the Apache community of open-source software projects. The Apache projects are characterized by a collaborative, consensus based development process, an open and pragmatic software license, and a desire to create high quality software that leads the way in its field. We consider ourselves not simply a group of projects sharing a server, but rather a community of developers and users. URL: http://ant.apache.org/ivy/ Project Licenses: The Apache Software License, Version 2.0

      • org.abego.treelayout:org.abego.treelayout.core:jar:1.0.3 (compile)

        abego TreeLayout Core
        Description: Efficient and customizable TreeLayout Algorithm in Java. URL: http://treelayout.sourceforge.net Project Licenses: BSD 3-Clause "New" or "Revised" License (BSD-3-Clause)

    • org.apache.groovy:groovy-datetime:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-docgenerator:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • com.thoughtworks.qdox:qdox:jar:2.2.0 (compile)

        QDox
        Description: QDox is a high speed, small footprint parser for extracting class/interface/method definitions from source files complete with JavaDoc @tags. It is designed to be used by active code generators or documentation tools. URL: https://github.com/paul-hammant/qdox Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-groovydoc:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-groovysh:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • net.java.dev.jna:jna:jar:5.18.1 (compile)

        Java Native Access
        Description: Java Native Access URL: https://github.com/java-native-access/jna Project Licenses: LGPL-2.1-or-later, Apache-2.0

      • org.jline:jansi:jar:3.30.6 (compile)

        Jansi Bundle
        Description: JLine URL: https://github.com/jline/jline3/jansi Project Licenses: The BSD License

      • org.jline:jline-reader:jar:3.30.6 (compile)

        JLine Reader
        Description: JLine URL: https://github.com/jline/jline3/jline-reader Project Licenses: The BSD License

      • org.jline:jline-console:jar:3.30.6 (compile)

        JLine Console
        Description: JLine URL: https://github.com/jline/jline3/jline-console Project Licenses: The BSD License

        • org.jline:jline-builtins:jar:3.30.6 (compile)

          JLine Builtins
          Description: JLine URL: https://github.com/jline/jline3/jline-builtins Project Licenses: The BSD License

        • org.jline:jline-style:jar:3.30.6 (compile)

          JLine Style
          Description: JLine URL: https://github.com/jline/jline3/jline-style Project Licenses: The BSD License

      • org.jline:jline-terminal-jni:jar:3.30.6 (compile)

        JLine JNI Terminal
        Description: JLine URL: https://github.com/jline/jline3/jline-terminal-jni Project Licenses: The BSD License

        • org.jline:jline-native:jar:3.30.6 (compile)

          JLine Native Library
          Description: JLine URL: https://github.com/jline/jline3/jline-native Project Licenses: The BSD License

      • org.jline:jline-terminal-jansi:jar:3.30.6 (compile)

        JLine JANSI Terminal
        Description: JLine URL: https://github.com/jline/jline3/jline-terminal-jansi Project Licenses: The BSD License

      • org.jline:jline-terminal-jna:jar:3.30.6 (compile)

        JLine JNA Terminal
        Description: JLine URL: https://github.com/jline/jline3/jline-terminal-jna Project Licenses: The BSD License

      • org.jline:jline-terminal:jar:3.30.6 (compile)

        JLine Terminal
        Description: JLine URL: https://github.com/jline/jline3/jline-terminal Project Licenses: The BSD License

    • org.apache.groovy:groovy-jmx:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-json:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-jsr223:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-macro:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-nio:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-servlet:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-sql:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-swing:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-templates:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-test:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • junit:junit:jar:4.13.2 (compile)

        JUnit
        Description: JUnit is a unit testing framework for Java, created by Erich Gamma and Kent Beck. URL: http://junit.org Project Licenses: Eclipse Public License 1.0

        • org.hamcrest:hamcrest-core:jar:1.3 (compile)

          Hamcrest Core
          Description: This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations. URL: https://github.com/hamcrest/JavaHamcrest/hamcrest-core Project Licenses: New BSD License

    • org.apache.groovy:groovy-test-junit5:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • org.junit.jupiter:junit-jupiter-api:jar:5.13.4 (compile)

        JUnit Jupiter API
        Description: Module "junit-jupiter-api" of JUnit 5. URL: https://junit.org/ Project Licenses: Eclipse Public License v2.0

        • org.opentest4j:opentest4j:jar:1.3.0 (compile)

          org.opentest4j:opentest4j
          Description: Open Test Alliance for the JVM URL: https://github.com/ota4j-team/opentest4j Project Licenses: The Apache License, Version 2.0

      • org.junit.jupiter:junit-jupiter-engine:jar:5.13.4 (compile)

        JUnit Jupiter Engine
        Description: Module "junit-jupiter-engine" of JUnit 5. URL: https://junit.org/ Project Licenses: Eclipse Public License v2.0

        • org.junit.platform:junit-platform-engine:jar:1.13.4 (compile)

          JUnit Platform Engine API
          Description: Module "junit-platform-engine" of JUnit 5. URL: https://junit.org/ Project Licenses: Eclipse Public License v2.0

          • org.junit.platform:junit-platform-commons:jar:1.13.4 (compile)

            JUnit Platform Commons
            Description: Module "junit-platform-commons" of JUnit 5. URL: https://junit.org/ Project Licenses: Eclipse Public License v2.0

      • org.junit.platform:junit-platform-launcher:jar:1.13.4 (compile)

        JUnit Platform Launcher
        Description: Module "junit-platform-launcher" of JUnit 5. URL: https://junit.org/ Project Licenses: Eclipse Public License v2.0

    • org.apache.groovy:groovy-xml:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

    • org.apache.groovy:groovy-yaml:jar:5.0.2 (compile)

      Apache Groovy
      Description: Groovy: A powerful multi-faceted language for the JVM URL: https://groovy-lang.org Project Licenses: The Apache Software License, Version 2.0

      • com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:jar:2.20.0 (compile)

        Jackson-dataformat-YAML
        Description: Support for reading and writing YAML-encoded data via Jackson abstractions. URL: https://github.com/FasterXML/jackson-dataformats-text Project Licenses: The Apache Software License, Version 2.0

        • org.yaml:snakeyaml:jar:2.4 (compile)

          SnakeYAML
          Description: YAML 1.1 parser and emitter for Java URL: https://bitbucket.org/snakeyaml/snakeyaml Project Licenses: Apache License, Version 2.0

        • com.fasterxml.jackson.core:jackson-core:jar:2.20.0 (compile)

          Jackson-core
          Description: Core Jackson processing abstractions (aka Streaming API), implementation for JSON URL: https://github.com/FasterXML/jackson-core Project Licenses: The Apache Software License, Version 2.0

      • com.fasterxml.jackson.core:jackson-databind:jar:2.20.0 (compile)

        jackson-databind
        Description: General data-binding functionality for Jackson: works on core streaming API URL: https://github.com/FasterXML/jackson Project Licenses: The Apache Software License, Version 2.0

        • com.fasterxml.jackson.core:jackson-annotations:jar:2.20 (compile)

          Jackson-annotations
          Description: Core annotations used for value types, used by Jackson data binding package. URL: https://github.com/FasterXML/jackson Project Licenses: The Apache Software License, Version 2.0

  • com.github.spotbugs:spotbugs-annotations:jar:4.9.8 (compile)

    SpotBugs Annotations
    Description: Annotations the SpotBugs tool supports URL: https://spotbugs.github.io/ Project Licenses: GNU LESSER GENERAL PUBLIC LICENSE, Version 2.1

    • com.google.code.findbugs:jsr305:jar:3.0.2 (compile)

      FindBugs-jsr305
      Description: JSR305 Annotations for Findbugs URL: http://findbugs.sourceforge.net/ Project Licenses: The Apache Software License, Version 2.0

  • org.graalvm.polyglot:polyglot:jar:25.0.1 (compile)

    Polyglot
    Description: A framework that allows to embed polyglot language implementations in Java. URL: https://github.com/oracle/graal Project Licenses: Universal Permissive License, Version 1.0

    • org.graalvm.sdk:collections:jar:25.0.1 (compile)

      Collections
      Description: A collections framework for GraalVM components. URL: https://github.com/oracle/graal Project Licenses: Universal Permissive License, Version 1.0

    • org.graalvm.sdk:nativeimage:jar:25.0.1 (compile)

      Nativeimage
      Description: A framework that allows to customize native image generation. URL: https://github.com/oracle/graal Project Licenses: Universal Permissive License, Version 1.0

      • org.graalvm.sdk:word:jar:25.0.1 (compile)

        Word
        Description: A low-level framework for machine-word-sized values in Java. URL: https://github.com/oracle/graal Project Licenses: Universal Permissive License, Version 1.0

  • org.graalvm.polyglot:python:pom:25.0.1 (runtime)

    Python Pom Polyglot
    Description: GraalPy, a high-performance embeddable Python 3 runtime for Java. This POM dependency includes GraalPy dependencies and Truffle Community Edition. URL: http://www.graalvm.org/ Project Licenses: MIT License, Python Software Foundation License, Universal Permissive License, Version 1.0

    • org.graalvm.python:python:pom:25.0.1 (runtime)

      Python Pom
      Description: GraalPy, a high-performance embeddable Python 3 runtime for Java. This POM dependency includes GraalPy dependencies and Truffle Community Edition. URL: http://www.graalvm.org/python Project Licenses: Universal Permissive License, Version 1.0, MIT License, Python Software Foundation License

      • org.graalvm.python:python-language:jar:25.0.1 (runtime)

        Graalpython

        Description: GraalPy, a high-performance embeddable Python 3 runtime for Java. This artifact includes the core language runtime without standard libraries. It is not recommended to depend on the artifact directly. Instead, use 'org.graalvm.polyglot:python' or 'org.graalvm.polyglot:python-community' to ensure all dependencies are pulled in correctly. URL: http://www.graalvm.org/python Project Licenses: Universal Permissive License, Version 1.0, MIT License, Python Software Foundation License

        • org.graalvm.truffle:truffle-api:jar:25.0.1 (runtime)

          Truffle API
          Description: Truffle is a multi-language framework for executing dynamic languages that achieves high performance when combined with Graal. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.tools:profiler-tool:jar:25.0.1 (runtime)

          Truffle Profiler
          Description: The core module of the Truffle profiler URL: http://openjdk.java.net/projects/graal Project Licenses: GNU General Public License, version 2, with the Classpath Exception

          • org.graalvm.shadowed:json:jar:25.0.1 (runtime)

            Truffle Json
            Description: JSON shaded module. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.regex:regex:jar:25.0.1 (runtime)

          Tregex
          Description: Truffle regular expressions language. URL: http://www.graalvm.org/ Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.truffle:truffle-nfi:jar:25.0.1 (runtime)

          Truffle Nfi
          Description: Native function interface for the Truffle framework. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.truffle:truffle-nfi-libffi:jar:25.0.1 (runtime)

          Truffle Nfi Libffi
          Description: Implementation of the Truffle NFI using libffi. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.truffle:truffle-nfi-panama:jar:25.0.1 (runtime)

          Truffle Nfi Panama
          Description: Implementation of the Truffle NFI using CLinker from project panama. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.shadowed:icu4j:jar:25.0.1 (runtime)

          Truffle Icu4j
          Description: ICU4J shaded module. URL: http://openjdk.java.net/projects/graal Project Licenses: Unicode/ICU License

        • org.graalvm.shadowed:xz:jar:25.0.1 (runtime)

          Truffle Xz
          Description: shaded XZ Java module. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.bouncycastle:bcprov-jdk18on:jar:1.78.1 (runtime)

          Bouncy Castle Provider
          Description: The Bouncy Castle Crypto package is a Java implementation of cryptographic algorithms. This jar contains JCE provider and lightweight API for the Bouncy Castle Cryptography APIs for JDK 1.8 and up. URL: https://www.bouncycastle.org/java.html Project Licenses: Bouncy Castle Licence

        • org.bouncycastle:bcpkix-jdk18on:jar:1.78.1 (runtime)

          Bouncy Castle PKIX, CMS, EAC, TSP, PKCS, OCSP, CMP, and CRMF APIs
          Description: The Bouncy Castle Java APIs for CMS, PKCS, EAC, TSP, CMP, CRMF, OCSP, and certificate generation. This jar contains APIs for JDK 1.8 and up. The APIs can be used in conjunction with a JCE/JCA provider such as the one provided with the Bouncy Castle Cryptography APIs. URL: https://www.bouncycastle.org/java.html Project Licenses: Bouncy Castle Licence

        • org.bouncycastle:bcutil-jdk18on:jar:1.78.1 (runtime)

          Bouncy Castle ASN.1 Extension and Utility APIs
          Description: The Bouncy Castle Java APIs for ASN.1 extension and utility APIs used to support bcpkix and bctls. This jar contains APIs for JDK 1.8 and up. URL: https://www.bouncycastle.org/java.html Project Licenses: Bouncy Castle Licence

      • org.graalvm.python:python-resources:jar:25.0.1 (runtime)

        Graalpython Resources

        Description: GraalPy, a high-performance embeddable Python 3 runtime for Java. This artifact includes the GraalPy standard library. It is not recommended to depend on the artifact directly. Instead, use 'org.graalvm.polyglot:python' or 'org.graalvm.polyglot:python-community' to ensure all dependencies are pulled in correctly. URL: http://www.graalvm.org/python Project Licenses: Universal Permissive License, Version 1.0, MIT License, Python Software Foundation License

      • org.graalvm.truffle:truffle-runtime:jar:25.0.1 (runtime)

        Truffle Runtime
        Description: The Truffle runtime for Graal Languages. It is not recommended to depend on this artifact directly. Instead, use a POM dependency of one or more Graal Languages (for example `org.graalvm.polyglot:js`) to ensure all dependencies are pulled in correctly. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.sdk:jniutils:jar:25.0.1 (runtime)

          Jniutils
          Description: Utilities for JNI calls from within native-image. URL: https://github.com/oracle/graal Project Licenses: Universal Permissive License, Version 1.0

        • org.graalvm.truffle:truffle-compiler:jar:25.0.1 (runtime)

          Truffle Compiler
          Description: Truffle compiler API. URL: http://openjdk.java.net/projects/graal Project Licenses: Universal Permissive License, Version 1.0

  • org.graalvm.python:python-embedding:jar:25.0.1 (compile)

    GraalPy embedding utilities
    Description: GraalPy, a high-performance embeddable Python 3 runtime for Java. This artifact provides convenience APIs to embed GraalPy into Java applications. Use this dependency if you install additional Python packages with the Maven or Gradle plugins for GraalPy. URL: https://graalvm.org/python Project Licenses: Universal Permissive License, Version 1.0