Project Dependencies
compile
The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:
| GroupId | ArtifactId | Version | Type | Licenses | Optional |
|---|---|---|---|---|---|
| edu.uiowa.biochem.ffx | ffx-pj | 26.0.4 | jar | GPL version 3 with Classpath Exception | No |
| edu.uiowa.biochem.ffx | ffx-utilities | 26.0.4 | jar | GPL version 3 with Classpath Exception | No |
| org.apache.commons | commons-math3 | 3.6.1 | jar | Apache License, Version 2.0 | No |
| org.apache.groovy | groovy-all | 5.1.2 | pom | The Apache Software License, Version 2.0 | No |
| org.graalvm.polyglot | polyglot | 25.3.4.1 | jar | Universal Permissive License, Version 1.0 | No |
| org.graalvm.python | python-embedding | 25.3.4.1 | jar | Universal Permissive License, Version 1.0 | No |
| tornado | tornado-api | 1.1.0 | jar | - | No |
| com.github.spotbugs | spotbugs-annotations | 4.10.4 | jar | GNU LESSER GENERAL PUBLIC LICENSE, Version 2.1 | Yes |
runtime
The following is a list of runtime dependencies for this project. These dependencies are required to run the application:
| GroupId | ArtifactId | Version | Type | Licenses |
|---|---|---|---|---|
| org.graalvm.polyglot | python | 25.3.4.1 | pom | MIT LicensePython Software Foundation LicenseUniversal Permissive License, Version 1.0 |
test
The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:
| GroupId | ArtifactId | Version | Type | Licenses |
|---|---|---|---|---|
| junit | junit | 4.13.2 | jar | Eclipse Public License 1.0 |
Project Transitive Dependencies
The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.
compile
The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:
runtime
The following is a list of runtime dependencies for this project. These dependencies are required to run the application:
test
The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:
| GroupId | ArtifactId | Version | Type | Licenses |
|---|---|---|---|---|
| org.hamcrest | hamcrest-core | 1.3 | jar | New BSD License |
Project Dependency Graph
Dependency Tree
- edu.uiowa.biochem.ffx:ffx-numerics:jar:26.0.4
- org.apache.commons:commons-math3:jar:3.6.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- edu.uiowa.biochem.ffx:ffx-pj:jar:26.0.4 (compile)
![[Information]](./images/icon_info_sml.gif)
- edu.uiowa.biochem.ffx:ffx-utilities:jar:26.0.4 (compile)
- info.picocli:picocli:jar:4.7.7 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.commons:commons-configuration2:jar:2.15.1 (compile)
- commons-logging:commons-logging:jar:1.3.6 (compile)
![[Information]](./images/icon_info_sml.gif)
- commons-logging:commons-logging:jar:1.3.6 (compile)
- org.apache.commons:commons-text:jar:1.15.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- commons-io:commons-io:jar:2.22.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.commons:commons-lang3:jar:3.20.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.antlr:antlr4:jar:4.13.2 (compile)
- org.antlr:antlr-runtime:jar:3.5.3 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.antlr:ST4:jar:4.3.4 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.abego.treelayout:org.abego.treelayout.core:jar:1.0.3 (compile)
![[Information]](./images/icon_info_sml.gif)
- com.ibm.icu:icu4j:jar:72.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.antlr:antlr-runtime:jar:3.5.3 (compile)
- org.antlr:antlr4-runtime:jar:4.13.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-console:jar:5.1.2 (compile)
- org.ow2.asm:asm-util:jar:9.10.1 (compile)
- org.ow2.asm:asm:jar:9.10.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.ow2.asm:asm-tree:jar:9.10.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.ow2.asm:asm-analysis:jar:9.10.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.ow2.asm:asm:jar:9.10.1 (compile)
- org.apache.ivy:ivy:jar:2.6.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.ow2.asm:asm-util:jar:9.10.1 (compile)
- org.apache.groovy:groovy-swing:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-ant:jar:5.1.2 (compile)
- org.apache.ant:ant:jar:1.10.17 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.ant:ant-junit:jar:1.10.17 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.ant:ant-launcher:jar:1.10.17 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.ant:ant-antlr:jar:1.10.17 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.ant:ant:jar:1.10.17 (compile)
- com.github.javaparser:javaparser-core:jar:3.28.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- commons-beanutils:commons-beanutils:jar:1.11.0 (runtime)
![[Information]](./images/icon_info_sml.gif)
- jakarta.xml.bind:jakarta.xml.bind-api:jar:4.0.5 (compile)
- jakarta.activation:jakarta.activation-api:jar:2.1.4 (compile)
![[Information]](./images/icon_info_sml.gif)
- jakarta.activation:jakarta.activation-api:jar:2.1.4 (compile)
- info.picocli:picocli:jar:4.7.7 (compile)
- junit:junit:jar:4.13.2 (test)
- org.hamcrest:hamcrest-core:jar:1.3 (test)
![[Information]](./images/icon_info_sml.gif)
- org.hamcrest:hamcrest-core:jar:1.3 (test)
- tornado:tornado-api:jar:1.1.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-all:pom:5.1.2 (compile)
- org.apache.groovy:groovy-cli-picocli:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-datetime:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-docgenerator:jar:5.1.2 (compile)
- com.thoughtworks.qdox:qdox:jar:2.2.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- com.thoughtworks.qdox:qdox:jar:2.2.0 (compile)
- org.apache.groovy:groovy-groovydoc:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-groovysh:jar:5.1.2 (compile)
- net.java.dev.jna:jna:jar:5.19.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jansi:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-reader:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-console:jar:3.30.16 (compile)
- org.jline:jline-builtins:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-style:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-builtins:jar:3.30.16 (compile)
- org.jline:jline-terminal-jni:jar:3.30.16 (compile)
- org.jline:jline-native:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-native:jar:3.30.16 (compile)
- org.jline:jline-terminal-jansi:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-terminal-jna:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.jline:jline-terminal:jar:3.30.16 (compile)
![[Information]](./images/icon_info_sml.gif)
- net.java.dev.jna:jna:jar:5.19.1 (compile)
- org.apache.groovy:groovy-jmx:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-json:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-jsr223:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-macro:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-nio:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-servlet:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-sql:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-templates:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-test:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-test-junit5:jar:5.1.2 (compile)
- org.junit.jupiter:junit-jupiter-api:jar:5.14.4 (compile)
- org.opentest4j:opentest4j:jar:1.3.0 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.opentest4j:opentest4j:jar:1.3.0 (compile)
- org.junit.jupiter:junit-jupiter-engine:jar:5.14.4 (compile)
- org.junit.platform:junit-platform-engine:jar:1.14.4 (compile)
- org.junit.platform:junit-platform-commons:jar:1.14.4 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.junit.platform:junit-platform-commons:jar:1.14.4 (compile)
- org.junit.platform:junit-platform-engine:jar:1.14.4 (compile)
- org.junit.platform:junit-platform-launcher:jar:1.14.4 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.junit.jupiter:junit-jupiter-api:jar:5.14.4 (compile)
- org.apache.groovy:groovy-xml:jar:5.1.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.groovy:groovy-yaml:jar:5.1.2 (compile)
- com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:jar:2.22.2 (compile)
- org.yaml:snakeyaml:jar:2.5 (compile)
![[Information]](./images/icon_info_sml.gif)
- com.fasterxml.jackson.core:jackson-core:jar:2.22.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.yaml:snakeyaml:jar:2.5 (compile)
- com.fasterxml.jackson.core:jackson-databind:jar:2.22.2 (compile)
- com.fasterxml.jackson.core:jackson-annotations:jar:2.22 (compile)
![[Information]](./images/icon_info_sml.gif)
- com.fasterxml.jackson.core:jackson-annotations:jar:2.22 (compile)
- com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:jar:2.22.2 (compile)
- org.apache.groovy:groovy-cli-picocli:jar:5.1.2 (compile)
- com.github.spotbugs:spotbugs-annotations:jar:4.10.4 (compile)
- com.google.code.findbugs:jsr305:jar:3.0.2 (compile)
![[Information]](./images/icon_info_sml.gif)
- com.google.code.findbugs:jsr305:jar:3.0.2 (compile)
- org.graalvm.polyglot:polyglot:jar:25.3.4.1 (compile)
- org.graalvm.sdk:collections:jar:25.3.4.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.sdk:nativeimage:jar:25.3.4.1 (compile)
- org.graalvm.sdk:word:jar:25.3.4.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.sdk:word:jar:25.3.4.1 (compile)
- org.graalvm.sdk:collections:jar:25.3.4.1 (compile)
- org.graalvm.polyglot:python:pom:25.3.4.1 (runtime)
- org.graalvm.python:python:pom:25.3.4.1 (runtime)
- org.graalvm.python:python-language:jar:25.3.4.1 (runtime)
- org.graalvm.truffle:truffle-api:jar:25.3.4.1 (runtime)
- org.graalvm.sdk:jniutils:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.sdk:jniutils:jar:25.3.4.1 (runtime)
- org.graalvm.tools:profiler-tool:jar:25.3.4.1 (runtime)
- org.graalvm.shadowed:json:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.shadowed:json:jar:25.3.4.1 (runtime)
- org.graalvm.regex:regex:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.shadowed:icu4j:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.shadowed:xz:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.truffle:truffle-api:jar:25.3.4.1 (runtime)
- org.graalvm.python:python-resources:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.truffle:truffle-runtime:jar:25.3.4.1 (runtime)
- org.graalvm.truffle:truffle-compiler:jar:25.3.4.1 (runtime)
![[Information]](./images/icon_info_sml.gif)
- org.graalvm.truffle:truffle-compiler:jar:25.3.4.1 (runtime)
- org.graalvm.python:python-language:jar:25.3.4.1 (runtime)
- org.graalvm.python:python:pom:25.3.4.1 (runtime)
- org.graalvm.python:python-embedding:jar:25.3.4.1 (compile)
![[Information]](./images/icon_info_sml.gif)
- org.apache.commons:commons-math3:jar:3.6.1 (compile)
Licenses
The Apache Software License, version 2.0: picocli
The BSD License: JLine Builtins, JLine Console, JLine JANSI Terminal, JLine JNA Terminal, JLine JNI Terminal, JLine Native Library, JLine Reader, JLine Style, JLine Terminal, Jansi Bundle, StringTemplate 4
Eclipse Public License 1.0: JUnit
The Apache License, Version 2.0: org.opentest4j:opentest4j
GNU General Public License, version 2, with the Classpath Exception: Truffle Profiler
BSD-3-Clause: ANTLR 4 Runtime, ANTLR 4 Tool, asm, asm-analysis, asm-tree, asm-util
MIT License: Graalpython, Graalpython Resources, Python Pom, Python Pom Polyglot
GPL version 3 with Classpath Exception: Numerics, Parallel Java, Utilities
Unicode/ICU License: ICU4J, Truffle Icu4j
Eclipse Public License v2.0: JUnit Jupiter API, JUnit Jupiter Engine, JUnit Platform Commons, JUnit Platform Engine API, JUnit Platform Launcher
GNU Lesser General Public License: com.github.javaparser:javaparser-core
BSD licence: ANTLR 3 Runtime
New BSD License: Hamcrest Core
GNU LESSER GENERAL PUBLIC LICENSE, Version 2.1: SpotBugs Annotations
BSD 3-Clause "New" or "Revised" License (BSD-3-Clause): abego TreeLayout Core
Python Software Foundation License: Graalpython, Graalpython Resources, Python Pom, Python Pom Polyglot
Unknown: tornado-api
EDL 1.0: Jakarta Activation API
LGPL-2.1-or-later: Java Native Access
Universal Permissive License, Version 1.0: Collections, GraalPy embedding utilities, Graalpython, Graalpython Resources, Jniutils, Nativeimage, Polyglot, Python Pom, Python Pom Polyglot, Tregex, Truffle API, Truffle Compiler, Truffle Json, Truffle Runtime, Truffle Xz, Word
Apache License, Version 2.0: Apache Commons Math, SnakeYAML, com.github.javaparser:javaparser-core
Apache-2.0: Apache Commons BeanUtils, Apache Commons Configuration, Apache Commons IO, Apache Commons Lang, Apache Commons Logging, Apache Commons Text, Java Native Access
Eclipse Distribution License - v 1.0: Jakarta XML Binding API
The Apache Software License, Version 2.0: Apache Ant + ANTLR, Apache Ant + JUnit, Apache Ant Core, Apache Ant Launcher, Apache Groovy, Apache Ivy, FindBugs-jsr305, Jackson-annotations, Jackson-core, Jackson-dataformat-YAML, QDox, jackson-databind

