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Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses Optional
edu.uiowa.eng.ffx ffx-pj 1.0.1 jar GPL version 3 with Classpath Exception No
edu.uiowa.eng.ffx ffx-utilities 1.0.0 jar GPL version 3 with Classpath Exception No
org.apache.commons commons-math3 3.6.1 jar Apache License, Version 2.0 No
org.apache.groovy groovy-all 5.0.1 pom The Apache Software License, Version 2.0 No
org.graalvm.polyglot polyglot 25.0.0 jar Universal Permissive License, Version 1.0 No
org.graalvm.python python-embedding 25.0.0 jar Universal Permissive License, Version 1.0 No
tornado tornado-api 1.1.0 jar - No
com.github.spotbugs spotbugs-annotations 4.9.7 jar GNU LESSER GENERAL PUBLIC LICENSE, Version 2.1 Yes

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
org.graalvm.polyglot python 25.0.0 pom MIT LicensePython Software Foundation LicenseUniversal Permissive License, Version 1.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
junit junit 4.13.2 jar Eclipse Public License 1.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses Optional
com.fasterxml.jackson.core jackson-annotations 2.19.2 jar The Apache Software License, Version 2.0 No
com.fasterxml.jackson.core jackson-core 2.19.2 jar The Apache Software License, Version 2.0 No
com.fasterxml.jackson.core jackson-databind 2.19.2 jar The Apache Software License, Version 2.0 No
com.fasterxml.jackson.dataformat jackson-dataformat-yaml 2.19.2 jar The Apache Software License, Version 2.0 No
com.github.javaparser javaparser-core 3.27.1 jar GNU Lesser General Public LicenseApache License, Version 2.0 No
com.ibm.icu icu4j 72.1 jar Unicode/ICU License No
com.thoughtworks.qdox qdox 2.2.0 jar The Apache Software License, Version 2.0 No
commons-io commons-io 2.20.0 jar Apache-2.0 No
commons-logging commons-logging 1.3.5 jar Apache-2.0 No
info.picocli picocli 4.7.7 jar The Apache Software License, version 2.0 No
jakarta.activation jakarta.activation-api 2.1.4 jar EDL 1.0 No
jakarta.xml.bind jakarta.xml.bind-api 4.0.4 jar Eclipse Distribution License - v 1.0 No
net.java.dev.jna jna 5.17.0 jar LGPL-2.1-or-laterApache-2.0 No
org.abego.treelayout org.abego.treelayout.core 1.0.3 jar BSD 3-Clause "New" or "Revised" License (BSD-3-Clause) No
org.antlr ST4 4.3.4 jar The BSD License No
org.antlr antlr-runtime 3.5.3 jar BSD licence No
org.antlr antlr4 4.13.2 jar BSD-3-Clause No
org.antlr antlr4-runtime 4.13.2 jar BSD-3-Clause No
org.apache.ant ant 1.10.15 jar The Apache Software License, Version 2.0 No
org.apache.ant ant-antlr 1.10.15 jar The Apache Software License, Version 2.0 No
org.apache.ant ant-junit 1.10.15 jar The Apache Software License, Version 2.0 No
org.apache.ant ant-launcher 1.10.15 jar The Apache Software License, Version 2.0 No
org.apache.commons commons-configuration2 2.12.0 jar Apache-2.0 No
org.apache.commons commons-lang3 3.19.0 jar Apache-2.0 No
org.apache.commons commons-text 1.14.0 jar Apache-2.0 No
org.apache.groovy groovy 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-ant 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-cli-picocli 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-console 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-datetime 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-docgenerator 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-groovydoc 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-groovysh 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-jmx 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-json 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-jsr223 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-macro 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-nio 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-servlet 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-sql 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-swing 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-templates 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-test 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-test-junit5 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-xml 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.groovy groovy-yaml 5.0.1 jar The Apache Software License, Version 2.0 No
org.apache.ivy ivy 2.5.3 jar The Apache Software License, Version 2.0 No
org.graalvm.sdk collections 25.0.0 jar Universal Permissive License, Version 1.0 No
org.graalvm.sdk nativeimage 25.0.0 jar Universal Permissive License, Version 1.0 No
org.graalvm.sdk word 25.0.0 jar Universal Permissive License, Version 1.0 No
org.jline jansi 3.30.5 jar The BSD License No
org.jline jline-builtins 3.30.5 jar The BSD License No
org.jline jline-console 3.30.5 jar The BSD License No
org.jline jline-native 3.30.5 jar The BSD License No
org.jline jline-reader 3.30.5 jar The BSD License No
org.jline jline-style 3.30.5 jar The BSD License No
org.jline jline-terminal 3.30.5 jar The BSD License No
org.jline jline-terminal-jansi 3.30.5 jar The BSD License No
org.jline jline-terminal-jna 3.30.5 jar The BSD License No
org.jline jline-terminal-jni 3.30.5 jar The BSD License No
org.junit.jupiter junit-jupiter-api 5.13.4 jar Eclipse Public License v2.0 No
org.junit.jupiter junit-jupiter-engine 5.13.4 jar Eclipse Public License v2.0 No
org.junit.platform junit-platform-commons 1.13.4 jar Eclipse Public License v2.0 No
org.junit.platform junit-platform-engine 1.13.4 jar Eclipse Public License v2.0 No
org.junit.platform junit-platform-launcher 1.13.4 jar Eclipse Public License v2.0 No
org.opentest4j opentest4j 1.3.0 jar The Apache License, Version 2.0 No
org.ow2.asm asm 9.8 jar BSD-3-Clause No
org.ow2.asm asm-analysis 9.8 jar BSD-3-Clause No
org.ow2.asm asm-tree 9.8 jar BSD-3-Clause No
org.ow2.asm asm-util 9.8 jar BSD-3-Clause No
org.yaml snakeyaml 2.4 jar Apache License, Version 2.0 No
com.google.code.findbugs jsr305 3.0.2 jar The Apache Software License, Version 2.0 Yes

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
commons-beanutils commons-beanutils 1.11.0 jar Apache-2.0
org.bouncycastle bcpkix-jdk18on 1.78.1 jar Bouncy Castle Licence
org.bouncycastle bcprov-jdk18on 1.78.1 jar Bouncy Castle Licence
org.bouncycastle bcutil-jdk18on 1.78.1 jar Bouncy Castle Licence
org.graalvm.python python 25.0.0 pom Universal Permissive License, Version 1.0MIT LicensePython Software Foundation License
org.graalvm.python python-language 25.0.0 jar Universal Permissive License, Version 1.0MIT LicensePython Software Foundation License
org.graalvm.python python-resources 25.0.0 jar Universal Permissive License, Version 1.0MIT LicensePython Software Foundation License
org.graalvm.regex regex 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.sdk jniutils 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.shadowed icu4j 25.0.0 jar Unicode/ICU License
org.graalvm.shadowed json 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.shadowed xz 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.tools profiler-tool 25.0.0 jar GNU General Public License, version 2, with the Classpath Exception
org.graalvm.truffle truffle-api 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.truffle truffle-compiler 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.truffle truffle-nfi 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.truffle truffle-nfi-libffi 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.truffle truffle-nfi-panama 25.0.0 jar Universal Permissive License, Version 1.0
org.graalvm.truffle truffle-runtime 25.0.0 jar Universal Permissive License, Version 1.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
org.hamcrest hamcrest-core 1.3 jar New BSD License

Project Dependency Graph

Dependency Tree

Licenses

The BSD License: JLine Builtins, JLine Console, JLine JANSI Terminal, JLine JNA Terminal, JLine JNI Terminal, JLine Native Library, JLine Reader, JLine Style, JLine Terminal, Jansi Bundle, StringTemplate 4

Eclipse Public License 1.0: JUnit

The Apache License, Version 2.0: org.opentest4j:opentest4j

GNU General Public License, version 2, with the Classpath Exception: Truffle Profiler

MIT License: Graalpython, Graalpython Resources, Python Pom, Python Pom Polyglot

Unicode/ICU License: ICU4J, Truffle Icu4j

Eclipse Public License v2.0: JUnit Jupiter API, JUnit Jupiter Engine, JUnit Platform Commons, JUnit Platform Engine API, JUnit Platform Launcher

BSD licence: ANTLR 3 Runtime

New BSD License: Hamcrest Core

Python Software Foundation License: Graalpython, Graalpython Resources, Python Pom, Python Pom Polyglot

Unknown: tornado-api

LGPL-2.1-or-later: Java Native Access

Universal Permissive License, Version 1.0: Collections, GraalPy embedding utilities, Graalpython, Graalpython Resources, Jniutils, Nativeimage, Polyglot, Python Pom, Python Pom Polyglot, Tregex, Truffle API, Truffle Compiler, Truffle Json, Truffle Nfi, Truffle Nfi Libffi, Truffle Nfi Panama, Truffle Runtime, Truffle Xz, Word

Apache License, Version 2.0: Apache Commons Math, SnakeYAML, com.github.javaparser:javaparser-core

Apache-2.0: Apache Commons BeanUtils, Apache Commons Configuration, Apache Commons IO, Apache Commons Lang, Apache Commons Logging, Apache Commons Text, Java Native Access

The Apache Software License, version 2.0: picocli

BSD-3-Clause: ANTLR 4 Runtime, ANTLR 4 Tool, asm, asm-analysis, asm-tree, asm-util

GPL version 3 with Classpath Exception: Numerics, Parallel Java, Utilities

GNU Lesser General Public License: com.github.javaparser:javaparser-core

GNU LESSER GENERAL PUBLIC LICENSE, Version 2.1: SpotBugs Annotations

Bouncy Castle Licence: Bouncy Castle ASN.1 Extension and Utility APIs, Bouncy Castle PKIX, CMS, EAC, TSP, PKCS, OCSP, CMP, and CRMF APIs, Bouncy Castle Provider

BSD 3-Clause "New" or "Revised" License (BSD-3-Clause): abego TreeLayout Core

EDL 1.0: Jakarta Activation API

Eclipse Distribution License - v 1.0: Jakarta XML Binding API

The Apache Software License, Version 2.0: Apache Ant + ANTLR, Apache Ant + JUnit, Apache Ant Core, Apache Ant Launcher, Apache Groovy, Apache Ivy, FindBugs-jsr305, Jackson-annotations, Jackson-core, Jackson-dataformat-YAML, QDox, jackson-databind