Hierarchy For All Packages

Package Hierarchies:

• ffx.algorithms.groovy,
• ffx.algorithms.optimize,
• ffx.crystal,
• ffx.numerics,
• ffx.numerics.estimator,
• ffx.numerics.fft,
• ffx.numerics.func1d,
• ffx.numerics.integrate,
• ffx.numerics.math,
• ffx.numerics.multipole,
• ffx.numerics.special,
• ffx.numerics.spline,
• ffx.potential.bonded,
• ffx.potential.groovy,
• ffx.potential.nonbonded,
• ffx.potential.parsers,
• ffx.potential.utils,
• ffx.realspace,
• ffx.utilities,
• ffx.xray,
• ffx.xray.parsers

Class Hierarchy

• java.lang.Object
  • ffx.numerics.multipole.AMOEBAPlusMultipoleTensorGlobalTest
  • ffx.potential.bonded.AngleTest
  • ffx.potential.bonded.AtomTest
  • ffx.potential.bonded.BondTest
  • ffx.numerics.multipole.CombinedTensorTest
  • ffx.numerics.fft.FFTTestSuite
  • ffx.utilities.FFXTest
    • ffx.algorithms.misc.AlgorithmsTest
      • ffx.algorithms.groovy.BARDualTopologyTest
      • ffx.algorithms.groovy.BARFilesTest
      • ffx.algorithms.groovy.BARSingleTopologyTest
      • ffx.xray.parsers.CIFFilterTest
      • ffx.algorithms.groovy.ClusteringTest
      • ffx.xray.CrystalReciprocalSpaceTest
      • ffx.algorithms.groovy.DynamicsBeemanBerendsenTest
      • ffx.algorithms.groovy.DynamicsInitVelocitiesTest
      • ffx.algorithms.groovy.DynamicsNVETest
      • ffx.algorithms.groovy.DynamicsNVTTest
      • ffx.algorithms.groovy.DynamicsOpenMMRESPANVETest
      • ffx.algorithms.groovy.DynamicsOpenMMStochasticTest
      • ffx.algorithms.groovy.DynamicsRESPANVETest
      • ffx.algorithms.groovy.DynamicsStochasticTest
      • ffx.xray.FiniteDifferenceTest
      • ffx.xray.FormFactorTest
      • ffx.algorithms.groovy.ManyBodyTest
      • ffx.algorithms.groovy.MBARFilesTest
      • ffx.algorithms.groovy.MinimizeCrystalsTest
      • ffx.algorithms.groovy.MinimizeTest
      • ffx.xray.parsers.MTZFilterTest
      • ffx.algorithms.groovy.OSTGradientTest
      • ffx.algorithms.optimize.PhRepexTest
      • ffx.realspace.RealspaceManyBodyTest
      • ffx.algorithms.optimize.RotamerOptimizationTest
      • ffx.algorithms.groovy.SimulatedAnnealingTest
      • ffx.algorithms.groovy.SuperposeCrystalsTest
      • ffx.algorithms.groovy.ThermodynamicsTest
      • ffx.xray.XRayManyBodyTest
      • ffx.xray.XRayMinimizeTest
    • ffx.numerics.fft.Complex2DTest
    • ffx.numerics.fft.Complex3DParallelTest
    • ffx.numerics.fft.Complex3DTest
    • ffx.numerics.fft.ComplexTest
    • ffx.crystal.CrystalVolumeDerivativeTest
    • ffx.numerics.special.ErfTest
    • ffx.potential.parsers.ForceFieldFilterTest
    • ffx.numerics.multipole.GKTensorGlobalTest
    • ffx.numerics.multipole.GKTensorQITest
    • ffx.numerics.integrate.Integrate1DTest
    • ffx.numerics.integrate.IntegrationTest
    • ffx.potential.bonded.LoopClosureTest
    • ffx.numerics.estimator.MBARHarmonicOscillatorsTest
    • ffx.numerics.special.ModifiedBesselTest
    • ffx.numerics.multipole.MultipoleTensorGlobalTest
    • ffx.numerics.multipole.MultipoleTensorQITest
    • ffx.numerics.multipole.MultipoleTensorTest
    • ffx.potential.utils.PotentialTest
      • ffx.potential.groovy.BiotypeTest
      • ffx.potential.groovy.Cart2FracTest
      • ffx.potential.groovy.ExportQETest
      • ffx.potential.groovy.FFtoXMLTest
      • ffx.potential.groovy.Frac2CartTest
      • ffx.potential.groovy.ImportCIFTest
      • ffx.potential.groovy.LambdaGradientTest
      • ffx.potential.groovy.MoveIntoUnitCellTest
      • ffx.potential.nonbonded.NeckIntegralTest
      • ffx.potential.groovy.OPLSAAEnergyTest
      • ffx.potential.groovy.ParentEnergyTest
        • ffx.potential.groovy.EnergyTest
        • ffx.potential.groovy.GKEnergyTest
      • ffx.potential.groovy.PhGradientTest
      • ffx.potential.groovy.PrepareSpaceGroupsTest
      • ffx.potential.groovy.SaveAsP1Test
      • ffx.potential.groovy.SaveAsPDBTest
      • ffx.potential.groovy.SaveAsXYZTest
      • ffx.potential.groovy.SolvatorTest
      • ffx.potential.groovy.TimerTest
      • ffx.potential.groovy.VolumeTest
    • ffx.numerics.func1d.QuasiLinearSwitchTest
    • ffx.numerics.fft.Real3DParallelTest
    • ffx.numerics.fft.Real3DTest
    • ffx.numerics.fft.RealTest
    • ffx.crystal.ReflectionListTest
    • ffx.numerics.math.SquareRootTest
    • ffx.potential.utils.SwitchFunctionTest
    • ffx.numerics.spline.UniformBSplineTest
  • ffx.utilities.Hybrid36Test
  • ffx.potential.bonded.MSNodeTest
  • ffx.numerics.multipole.MultipoleTensorGlobalSIMDTest
  • ffx.numerics.multipole.MultipoleTensorQISIMDTest
  • ffx.numerics.multipole.MultipoleTestSuite
  • ffx.numerics.NumericsTestSuite
  • ffx.potential.bonded.TorsionTest