Uses of Package
ffx.utilities

Packages that use ffx.utilities

Package	Description
ffx	Force Field X implements fixed charge and polarizable atomic multipole molecular mechanics potentials, local and global optimization, molecular dynamics, free energy differences, etc, with special support for crystal space groups.
ffx.algorithms.cli	The Algorithms CLI package defines options for PicoCLI command line scripts.
ffx.algorithms.commands
ffx.algorithms.commands.test
ffx.algorithms.misc	The Misc package contains a few miscellaneous algorithms.
ffx.crystal	The Crystal package implements space group symmetry and periodic boundary condition support.
ffx.potential	The Potential package implements molecular mechanics force fields with shared memory Parallel Java and via OpenMM.
ffx.potential.cli	The Potential CLI package defines reusable options for PicoCLI command line scripts.
ffx.potential.commands
ffx.potential.commands.test
ffx.potential.nonbonded	The Nonbonded package implements nonbonded molecular mechanics terms such as van der Waals and Particle Mesh Ewald electrostastics.
ffx.potential.nonbonded.pme	The pme package implements polarization and permanent electrostatics using Particle Mesh Ewald (PME).
ffx.potential.parameters	The Parameters package stores force field atom types, bond types, etc, and keywords that define the potential.
ffx.potential.parsers	The Parsers package handles reading/writing files to/from the internal data structure.
ffx.potential.utils	The Utils package implements core functionality needed for using the Potential package, such as opening and closing structure files, basic force field energy evaluations, etc.
ffx.realspace.commands
ffx.realspace.commands.test
ffx.ui	The UI package provides views and controllers for manipulating molecular systems.
ffx.utilities	The Utilities package implements a variety of useful Directory, File, Port, String, etc functionality.
ffx.xray.cli	The X-ray CLI package defines options for PicoCLI command line scripts.
ffx.xray.commands
ffx.xray.commands.test

Classes in ffx.utilities used by ffx

Class	Description
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.algorithms.cli

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.algorithms.commands

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.algorithms.commands.test

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.algorithms.misc

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXTest	The FFXTest configures the context for FFX tests.

Classes in ffx.utilities used by ffx.crystal

Class	Description
FFXProperty	The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.

Classes in ffx.utilities used by ffx.potential

Class	Description
FFXProperty	The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.

Classes in ffx.utilities used by ffx.potential.cli

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.potential.commands

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.potential.commands.test

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.potential.nonbonded

Class	Description
FFXProperty	The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.

Classes in ffx.utilities used by ffx.potential.nonbonded.pme

Class	Description
FFXProperties	The FFXProperty Annotation can be applied multiple times to some classes.
FFXProperty	The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.

Classes in ffx.utilities used by ffx.potential.parameters

Class	Description
FFXProperties	The FFXProperty Annotation can be applied multiple times to some classes.
FFXProperty	The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.

Classes in ffx.utilities used by ffx.potential.parsers

Class	Description
Keyword	The Keyword class holds a single Force Field X keyword entry.

Classes in ffx.utilities used by ffx.potential.utils

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXTest	The FFXTest configures the context for FFX tests.

Classes in ffx.utilities used by ffx.realspace.commands

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.realspace.commands.test

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.ui

Class	Description
FFXCommand	Base FFX Command class.
Keyword	The Keyword class holds a single Force Field X keyword entry.

Classes in ffx.utilities used by ffx.utilities

Class	Description
DoubleIndexPair	DoubleIndexPair record.
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.
ObjectPair	ObjectPair record.
PropertyGroup	The Keyword Group for an FFX Keyword.

Classes in ffx.utilities used by ffx.xray.cli

Class	Description
FFXProperty	The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.

Classes in ffx.utilities used by ffx.xray.commands

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.

Classes in ffx.utilities used by ffx.xray.commands.test

Class	Description
FFXBinding	The FFXBinding binds variable names to their instances for an FFX Command.
FFXCommand	Base FFX Command class.