Package ffx.utilities


@ParametersAreNonnullByDefault package ffx.utilities
The Utilities package implements a variety of useful Directory, File, Port, String, etc functionality.
Since:
1.0
Author:
Michael J. Schnieders
  • Class
    Description
    ByteSwap class.
    Library class containing constants such as Avogadro's number.
    DirectoryUtils class.
    DoubleIndexPair record.
    Convert a Double to a String and vice versa for use with JAXB.
    Download utilities.
    Base Command class.
    This represents the context of an FFX MolecularAssembly.
    The FFXProperty Annotation can be applied multiple times to some classes.
    The FFXProperty Annotation should be used to document fields that are set using property files, keyword files, force field parameter files and the Java property system.
    BaseScript class.
    The FFXTest configures the context for FFX tests.
    FileUtils class.
    Write/read Histogram data to/from a String.
    Java port of the hy36encode() and hy36decode() functions in the hybrid_36.py Python prototype/reference implementation.
    The IndexIndexPair record.
    The Keyword class holds a single Force Field X keyword entry.
    ObjectPair<T,S extends Comparable<S>>
    ObjectPair record.
    Port Utilities.
    The Keyword Group for an FFX Keyword.
    Log out FFXProperty Annotations for documentation purposes.
    Log resources.
    StringOutputStream class.
    StringUtils class.
    A collection of Utility methods for compatibility with Tinker.