Hierarchy For Package ffx.potential.bonded

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • ffx.potential.bonded.AminoAcidUtils
  • ffx.potential.bonded.BondedTerm.BondedComparator (implements java.util.Comparator<T>)
  • ffx.potential.bonded.BondedUtils
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • ffx.potential.bonded.MSNode (implements ffx.potential.bonded.ROLS)
      • ffx.potential.bonded.Atom (implements java.lang.Comparable<T>)
      • ffx.potential.bonded.BondedTerm (implements ffx.potential.bonded.BondedEnergy, java.lang.Comparable<T>)
        • ffx.potential.bonded.Angle
        • ffx.potential.bonded.AngleTorsion (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.Bond
        • ffx.potential.bonded.ImproperTorsion
        • ffx.potential.bonded.OutOfPlaneBend
        • ffx.potential.bonded.PiOrbitalTorsion (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.RestrainDistance (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.RestraintTorsion (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.StretchBend (implements java.lang.Comparable<T>)
        • ffx.potential.bonded.StretchTorsion (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.Torsion (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.TorsionTorsion (implements ffx.potential.bonded.LambdaInterface)
        • ffx.potential.bonded.UreyBradley
      • ffx.potential.bonded.Joint
      • ffx.potential.bonded.MSGroup
        • ffx.potential.bonded.Molecule
        • ffx.potential.bonded.Polymer
        • ffx.potential.bonded.Residue (implements java.lang.Comparable<T>)
          • ffx.potential.bonded.MultiResidue
      • ffx.potential.bonded.MSRoot
      • ffx.potential.bonded.ROLSP (implements ffx.potential.bonded.ROLS, java.lang.Runnable)
  • ffx.potential.bonded.NamingUtils
  • ffx.potential.bonded.NucleicAcidUtils
  • ffx.potential.bonded.PolymerUtils
  • ffx.potential.bonded.RelativeSolvation
  • ffx.potential.bonded.RendererCache
  • ffx.potential.bonded.ResidueState
  • ffx.potential.bonded.Rotamer
  • ffx.potential.bonded.RotamerLibrary
  • ffx.potential.bonded.RotamerLibrary.RotamerGuess
  • ffx.potential.bonded.SturmMethod
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • ffx.potential.bonded.BondedUtils.MissingAtomTypeException
      • ffx.potential.bonded.BondedUtils.MissingHeavyAtomException

Interface Hierarchy

• ffx.potential.bonded.AminoAcidUtils.SideChainType
• ffx.potential.bonded.BondedEnergy
• ffx.potential.bonded.LambdaInterface
• ffx.potential.bonded.ROLS

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • ffx.potential.bonded.AminoAcidUtils.AA
    • ffx.potential.bonded.AminoAcidUtils.AIB (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ALA (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.AminoAcid1
    • ffx.potential.bonded.AminoAcidUtils.AminoAcid3
    • ffx.potential.bonded.AminoAcidUtils.AminoAcidBackboneAtoms
    • ffx.potential.bonded.AminoAcidUtils.ARG (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ASD (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ASH (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ASN (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ASP (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.CYD (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.CYS (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.CYX (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.GLD (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.GLH (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.GLN (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.GLU (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.GLY
    • ffx.potential.bonded.AminoAcidUtils.GlycineBackboneAtoms
    • ffx.potential.bonded.AminoAcidUtils.HID (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.HIE (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.HIS (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ILE (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.LEU (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.LYD (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.LYS (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.MET (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ORN (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.PCA (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.PHE (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.PRO (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.ProlineBackboneAtoms
    • ffx.potential.bonded.AminoAcidUtils.ResiduePosition
    • ffx.potential.bonded.AminoAcidUtils.SER (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.THR (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.TRP (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.TYD (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.TYR (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.AminoAcidUtils.VAL (implements ffx.potential.bonded.AminoAcidUtils.SideChainType)
    • ffx.potential.bonded.Atom.Descriptions
    • ffx.potential.bonded.Atom.ElementSymbol
    • ffx.potential.bonded.Atom.Resolution
    • ffx.potential.bonded.NamingUtils.HetAtoms
    • ffx.potential.bonded.NucleicAcidUtils.NA
    • ffx.potential.bonded.NucleicAcidUtils.NucleicAcid1
    • ffx.potential.bonded.NucleicAcidUtils.NucleicAcid3
    • ffx.potential.bonded.RelativeSolvation.SolvationLibrary
    • ffx.potential.bonded.RendererCache.ColorModel
    • ffx.potential.bonded.RendererCache.ViewModel
    • ffx.potential.bonded.Residue.ResidueType
    • ffx.potential.bonded.Residue.SSType
    • ffx.potential.bonded.ROLSP.PARALLELMETHOD
    • ffx.potential.bonded.RotamerLibrary.NucleicAcidLibrary
    • ffx.potential.bonded.RotamerLibrary.NucleicSugarPucker
    • ffx.potential.bonded.RotamerLibrary.ProteinLibrary