Package ffx.potential.bonded

Class ROLSP

java.lang.Object

javax.swing.tree.DefaultMutableTreeNode

ffx.potential.bonded.MSNode

ffx.potential.bonded.ROLSP

All Implemented Interfaces:

ROLS, Serializable, Cloneable, Runnable, MutableTreeNode, TreeNode

public class ROLSP
extends MSNode
implements ROLS, Runnable

The ROLSP class is used for Proof-Of-Concept Parallel Recusive Over Length Scales (ROLS) Methods (currently only on shared memory systems). Simply inserting a ParallelMSM node into the Hierarchy causes a seperate thread of execution to be created for all operations on nodes below the ROLSP node. This is very preliminary code, but a useful concept for parallelizing ROLS in ffe.lang.

Since:

1.0

Author:

Michael J. Schnieders

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static enum	ROLSP.PARALLELMETHOD

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	GO_PARALLEL	Constant GO_PARALLEL=false
static int	parallelNotDone	Constant parallelNotDone=0

Fields inherited from class ffx.potential.bonded.MSNode

selected

Fields inherited from class javax.swing.tree.DefaultMutableTreeNode

allowsChildren, children, EMPTY_ENUMERATION, parent, userObject

Fields inherited from interface ffx.potential.bonded.ROLS

MaxLengthScale

Constructor Summary

Constructors

Constructor	Description
ROLSP()	Constructor for ROLSP.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
int	hashCode()
void	run()
void	setView(RendererCache.ViewModel viewModel, List<org.jogamp.java3d.BranchGroup> newShapes)	setView
String	toString()

Methods inherited from class ffx.potential.bonded.MSNode

contains, destroy, drawLabel, getAngleList, getAngleTorsionList, getAtomList, getAtomList, getBondList, getCenter, getChildList, getExtent, getImproperTorsionList, getList, getList, getMSCount, getMSNode, getMW, getName, getOutOfPlaneBendList, getPiOrbitalTorsionList, getStretchBendList, getStretchTorsionList, getTorsionList, getTorsionTorsionList, getTotalMass, getUreyBradleyList, isSelected, print, removeChild, setColor, setName, setSelected, update

Methods inherited from class javax.swing.tree.DefaultMutableTreeNode

add, breadthFirstEnumeration, children, clone, depthFirstEnumeration, getAllowsChildren, getChildAfter, getChildAt, getChildBefore, getChildCount, getDepth, getFirstChild, getFirstLeaf, getIndex, getLastChild, getLastLeaf, getLeafCount, getLevel, getNextLeaf, getNextNode, getNextSibling, getParent, getPath, getPathToRoot, getPreviousLeaf, getPreviousNode, getPreviousSibling, getRoot, getSharedAncestor, getSiblingCount, getUserObject, getUserObjectPath, insert, isLeaf, isNodeAncestor, isNodeChild, isNodeDescendant, isNodeRelated, isNodeSibling, isRoot, pathFromAncestorEnumeration, postorderEnumeration, preorderEnumeration, remove, remove, removeAllChildren, removeFromParent, setAllowsChildren, setParent, setUserObject

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ffx.potential.bonded.ROLS

drawLabel, getCenter, getList, getMSCount, getMSNode, getMW, setColor, update

Field Details

GO_PARALLEL

public static boolean GO_PARALLEL

Constant GO_PARALLEL=false

parallelNotDone

public static int parallelNotDone

Constant parallelNotDone=0

Constructor Details

ROLSP

public ROLSP()

Constructor for ROLSP.

Method Details

equals

public boolean equals(Object o)

MSNode equality := same class and same name. Consider replacing with a Comparator<MSNode> for cases where non-reference equality is desired.

Overidden equals method.

Overrides:

equals in class MSNode

hashCode

public int hashCode()

Overrides:

hashCode in class MSNode

run

public void run()

Specified by:

run in interface Runnable

setView

public void setView(RendererCache.ViewModel viewModel,
 List<org.jogamp.java3d.BranchGroup> newShapes)

setView

Specified by:

setView in interface ROLS

Overrides:

setView in class MSNode

Parameters:

viewModel - a RendererCache.ViewModel object.

newShapes - a List object.

toString

public String toString()

Overridden toString method returns the MSNode's name

Overrides:

toString in class MSNode