Package ffx.potential.bonded

Enum Class NucleicAcidUtils.NucleicAcid3

java.lang.Object

java.lang.Enum<NucleicAcidUtils.NucleicAcid3>

ffx.potential.bonded.NucleicAcidUtils.NucleicAcid3

All Implemented Interfaces:

Serializable, Comparable<NucleicAcidUtils.NucleicAcid3>, Constable

Enclosing class:

NucleicAcidUtils

public static enum NucleicAcidUtils.NucleicAcid3
extends Enum<NucleicAcidUtils.NucleicAcid3>

Since enumeration values must start with a letter, an 'M' is added to modified bases whose IUPAC name starts with an integer.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
ADE
CYT
DAD
DCY
DGU
DP2
DTY
GUA
H2U
M1MA
M2G
M2MG
M5MC
M5MU
M7MG
MP1
OMC
OMG
PSU
THY
TP3
UNK
URI
YYG

Method Summary

Modifier and Type	Method	Description
static NucleicAcidUtils.NucleicAcid3	parse(String name)	Best-guess parse of a String to an NA3.
static NucleicAcidUtils.NucleicAcid3	valueOf(String name)	Returns the enum constant of this class with the specified name.
static NucleicAcidUtils.NucleicAcid3[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

ADE

public static final NucleicAcidUtils.NucleicAcid3 ADE

GUA

public static final NucleicAcidUtils.NucleicAcid3 GUA

CYT

public static final NucleicAcidUtils.NucleicAcid3 CYT

URI

public static final NucleicAcidUtils.NucleicAcid3 URI

DAD

public static final NucleicAcidUtils.NucleicAcid3 DAD

DGU

public static final NucleicAcidUtils.NucleicAcid3 DGU

DCY

public static final NucleicAcidUtils.NucleicAcid3 DCY

DTY

public static final NucleicAcidUtils.NucleicAcid3 DTY

THY

public static final NucleicAcidUtils.NucleicAcid3 THY

MP1

public static final NucleicAcidUtils.NucleicAcid3 MP1

DP2

public static final NucleicAcidUtils.NucleicAcid3 DP2

TP3

public static final NucleicAcidUtils.NucleicAcid3 TP3

UNK

public static final NucleicAcidUtils.NucleicAcid3 UNK

M2MG

public static final NucleicAcidUtils.NucleicAcid3 M2MG

H2U

public static final NucleicAcidUtils.NucleicAcid3 H2U

M2G

public static final NucleicAcidUtils.NucleicAcid3 M2G

OMC

public static final NucleicAcidUtils.NucleicAcid3 OMC

OMG

public static final NucleicAcidUtils.NucleicAcid3 OMG

PSU

public static final NucleicAcidUtils.NucleicAcid3 PSU

M5MC

public static final NucleicAcidUtils.NucleicAcid3 M5MC

M7MG

public static final NucleicAcidUtils.NucleicAcid3 M7MG

M5MU

public static final NucleicAcidUtils.NucleicAcid3 M5MU

M1MA

public static final NucleicAcidUtils.NucleicAcid3 M1MA

YYG

public static final NucleicAcidUtils.NucleicAcid3 YYG

Method Details

values

public static NucleicAcidUtils.NucleicAcid3[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static NucleicAcidUtils.NucleicAcid3 valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null

parse

public static NucleicAcidUtils.NucleicAcid3 parse(String name)
                                           throws IllegalArgumentException

Best-guess parse of a String to an NA3.

Parameters:

name - Parse to NA3.

Returns:

Corresponding NA3.

Throws:

IllegalArgumentException - For 'DU', which has no implemented NA3.