Uses of Enum Class
ffx.xray.refine.RefinementMode

Packages that use RefinementMode

Package	Description
ffx.xray	The X-ray package implements support for X-ray and Neutron refinement.
ffx.xray.cli	The X-ray CLI package defines options for PicoCLI command line scripts.
ffx.xray.refine
ffx.xray.scatter

Uses of RefinementMode in ffx.xray

Methods in ffx.xray with parameters of type RefinementMode

Modifier and Type	Method	Description
void	CrystalReciprocalSpace.computeAtomicGradients(double[][] hklData, int[] freer, int flag, RefinementMode refinementMode)	compute inverse FFT to determine atomic gradients

Uses of RefinementMode in ffx.xray.cli

Fields in ffx.xray.cli declared as RefinementMode

Modifier and Type	Field	Description
protected RefinementMode	DataRefinementOptions.refinementMode	The refinement mode to use.
RefinementMode	XrayOptions.refinementMode	The refinement mode to use.

Uses of RefinementMode in ffx.xray.refine

Methods in ffx.xray.refine that return RefinementMode

Modifier and Type	Method	Description
RefinementMode	RefinementModel.getRefinementMode()	Retrieves the current refinement mode set in the object.
static RefinementMode	RefinementMode.parseMode(String mode)	Parse a string into a refinement mode.
static RefinementMode	RefinementMode.valueOf(String name)	Returns the enum constant of this class with the specified name.
static RefinementMode[]	RefinementMode.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in ffx.xray.refine with parameters of type RefinementMode

Modifier and Type	Method	Description
void	RefinementModel.setRefinementMode(RefinementMode mode)	Sets the refinement mode and adjusts the refined parameters based on the provided mode.

Constructors in ffx.xray.refine with parameters of type RefinementMode

Modifier	Constructor	Description
	RefinementModel(RefinementMode refinementMode, MolecularAssembly[] molecularAssemblies)	Constructor for RefinementModel.

Uses of RefinementMode in ffx.xray.scatter

Methods in ffx.xray.scatter with parameters of type RefinementMode

Modifier and Type	Method	Description
void	FormFactor.rhoGrad(double[] xyz, double dfc, RefinementMode refinementmode)	Compute the real space gradient
void	NeutronFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMode refinementmode)	Compute the real space gradient
void	SolventBinaryFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMode refinementmode)	Derivatives are zero or infinite for the binary model.
void	SolventGaussFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMode refinementmode)	Compute the real space gradient
void	SolventPolyFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMode refinementmode)	Compute the real space gradient
void	XRayFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMode refinementMode)	Compute the real space gradient