Uses of Class
ffx.xray.RefinementEnergy

Packages that use RefinementEnergy

Package	Description
ffx.realspace.cli	The Real Space CLI package defines options for PicoCLI command line scripts.
ffx.xray	The X-ray package implements support for X-ray and Neutron refinement.
ffx.xray.cli	The X-ray CLI package defines options for PicoCLI command line scripts.

Uses of RefinementEnergy in ffx.realspace.cli

Methods in ffx.realspace.cli that return RefinementEnergy

Modifier and Type	Method	Description
RefinementEnergy	RealSpaceOptions.toRealSpaceEnergy(List<String> filenames, MolecularAssembly[] molecularAssemblies)	Process input from opened molecular assemblies to a RefinementEnergy

Uses of RefinementEnergy in ffx.xray

Fields in ffx.xray declared as RefinementEnergy

Modifier and Type	Field	Description
final RefinementEnergy	RefinementMinimize.refinementEnergy

Methods in ffx.xray that return RefinementEnergy

Modifier and Type	Method	Description
RefinementEnergy	RefinementMinimize.minimize()	minimize assuming an eps of 1.0 and Integer.MAX_VALUE cycles
RefinementEnergy	RefinementMinimize.minimize(double eps)	minimize assuming Integer.MAX_VALUE cycles
RefinementEnergy	RefinementMinimize.minimize(double eps, int maxiter)	minimize with input eps and cycles
RefinementEnergy	RefinementMinimize.minimize(int maxiter)	minimize assuming an eps of 1.0 and limited cycles
RefinementEnergy	RefinementMinimize.minimize(int m, double eps, int maxiter)	minimize with input cycles for matrix conditioning, eps and cycles

Uses of RefinementEnergy in ffx.xray.cli

Methods in ffx.xray.cli that return RefinementEnergy

Modifier and Type	Method	Description
RefinementEnergy	XrayOptions.toXrayEnergy(DiffractionData diffractionData)	Process input from opened molecular assemblies and diffraction data to a RefinementEnergy.