Uses of Class
ffx.algorithms.thermodynamics.MonteCarloOST

Packages that use MonteCarloOST

Package	Description
ffx.algorithms.cli	The Algorithms CLI package defines options for PicoCLI command line scripts.
ffx.algorithms.thermodynamics	The Thermodynamics package computes free energy differences using Orthogonal Space Tempering (OST) sampling via pure Java or OpenMM (via Monte Carlo OST).

Uses of MonteCarloOST in ffx.algorithms.cli

Methods in ffx.algorithms.cli that return MonteCarloOST

Modifier and Type	Method	Description
MonteCarloOST	OSTOptions.setupMCOST(OrthogonalSpaceTempering orthogonalSpaceTempering, MolecularAssembly[] molecularAssemblies, DynamicsOptions dynamicsOptions, ThermodynamicsOptions thermodynamicsOptions, boolean verbose, File dynRestart, AlgorithmListener algorithmListener)	setupMCOST.

Methods in ffx.algorithms.cli with parameters of type MonteCarloOST

Modifier and Type	Method	Description
void	OSTOptions.beginMCOST(MonteCarloOST monteCarloOST, DynamicsOptions dynamicsOptions, ThermodynamicsOptions thermodynamicsOptions)	Runs MC-OST.

Uses of MonteCarloOST in ffx.algorithms.thermodynamics

Methods in ffx.algorithms.thermodynamics with parameters of type MonteCarloOST

Modifier and Type	Method	Description
static RepExOST	RepExOST.repexMC(OrthogonalSpaceTempering orthogonalSpaceTempering, MonteCarloOST monteCarloOST, DynamicsOptions dynamicsOptions, OSTOptions ostOptions, org.apache.commons.configuration2.CompositeConfiguration compositeConfiguration, String fileType, boolean twoStep, double repexInterval)	Construct a RepExOST for Monte Carlo orthogonal space tempering.