Package ffx.xray.commands
Class SaveConformerPDB
java.lang.Object
ffx.utilities.FFXCommand
ffx.algorithms.cli.AlgorithmsCommand
ffx.xray.commands.SaveConformerPDB
The SaveConformerPDB script saves alternate conformers with proper alt loc labels.
Usage:
ffxc xray.SaveConformerPDB [options] <filename>
Usage:
ffxc xray.SaveConformerPDB [options] <filename>
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Field Summary
Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand
activeAssembly, algorithmFunctions, algorithmListener, baseDir
Fields inherited from class ffx.utilities.FFXCommand
args, binding, color, help, logger, parseResult, version
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Constructor Summary
ConstructorsConstructorDescriptionSaveConformerPDB constructor.SaveConformerPDB
(FFXBinding binding) SaveConformerPDB constructor.SaveConformerPDB
(String[] args) SaveConformerPDB constructor that sets the command line arguments. -
Method Summary
Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand
destroyPotentials, getActiveAssemblies, getActiveAssembly, getPotentials, init, saveDirFile, setActiveAssembly, setBaseDir, updateTitle
Methods inherited from class ffx.utilities.FFXCommand
getCommand, helpString, listCommands, setBinding
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Constructor Details
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SaveConformerPDB
public SaveConformerPDB()SaveConformerPDB constructor. -
SaveConformerPDB
SaveConformerPDB constructor that sets the command line arguments.- Parameters:
args
- Command line arguments.
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SaveConformerPDB
SaveConformerPDB constructor.- Parameters:
binding
- The Binding to use.
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Method Details
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run
Description copied from class:FFXCommand
Execute this Command.- Overrides:
run
in classFFXCommand
- Returns:
- The current FFXCommand.
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