Package ffx.xray.commands

Class SaveConformerPDB

java.lang.Object

ffx.utilities.FFXCommand

ffx.algorithms.cli.AlgorithmsCommand

ffx.xray.commands.SaveConformerPDB

public class SaveConformerPDB
extends AlgorithmsCommand

The SaveConformerPDB script saves alternate conformers with proper alt loc labels.
Usage:
ffxc xray.SaveConformerPDB [options] <filename>

Field Summary

Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand

activeAssembly, algorithmFunctions, algorithmListener, baseDir

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
SaveConformerPDB()	SaveConformerPDB constructor.
SaveConformerPDB(FFXBinding binding)	SaveConformerPDB constructor.
SaveConformerPDB(String[] args)	SaveConformerPDB constructor that sets the command line arguments.

Method Summary

Modifier and Type	Method	Description
SaveConformerPDB	run()	Execute this Command.

Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand

destroyPotentials, getActiveAssemblies, getActiveAssembly, getPotentials, getPotentialsFromAssemblies, init, saveDirFile, setBaseDir, updateTitle

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SaveConformerPDB

public SaveConformerPDB()

SaveConformerPDB constructor.

SaveConformerPDB

public SaveConformerPDB(String[] args)

SaveConformerPDB constructor that sets the command line arguments.

Parameters:

args - Command line arguments.

SaveConformerPDB

public SaveConformerPDB(FFXBinding binding)

SaveConformerPDB constructor.

Parameters:

binding - The Binding to use.

Method Details

run

public SaveConformerPDB run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.