Package ffx.xray.commands

Class AverageMTZ

java.lang.Object

ffx.utilities.FFXCommand

ffx.algorithms.cli.AlgorithmsCommand

ffx.xray.commands.AverageMTZ

public class AverageMTZ
extends AlgorithmsCommand

Use AverageMTZ to provide two MTZ files and an iteration for a cumulative moving average.
Usage:
ffxc xray.AverageMTZ <filename1> <filename2>

Field Summary

Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand

activeAssembly, algorithmFunctions, algorithmListener, baseDir

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
AverageMTZ()	AverageMTZ constructor.
AverageMTZ(FFXBinding binding)	AverageMTZ constructor.
AverageMTZ(String[] args)	AverageMTZ constructor that sets the command line arguments.

Method Summary

Modifier and Type	Method	Description
List<Potential>	getPotentials()	Returns a List of all Potential objects associated with this script.
AverageMTZ	run()	Execute this Command.

Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand

destroyPotentials, getActiveAssemblies, getActiveAssembly, getPotentialsFromAssemblies, init, saveDirFile, setBaseDir, updateTitle

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AverageMTZ

public AverageMTZ()

AverageMTZ constructor.

AverageMTZ

public AverageMTZ(String[] args)

AverageMTZ constructor that sets the command line arguments.

Parameters:

args - Command line arguments.

AverageMTZ

public AverageMTZ(FFXBinding binding)

AverageMTZ constructor.

Parameters:

binding - The Binding to use.

Method Details

run

public AverageMTZ run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.

getPotentials

public List<Potential> getPotentials()

Description copied from class: AlgorithmsCommand

Returns a List of all Potential objects associated with this script.

Overrides:

getPotentials in class AlgorithmsCommand

Returns:

All Potentials. Sometimes empty, never null.