Uses of Enum Class
ffx.xray.RefinementMinimize.RefinementMode

Packages that use RefinementMinimize.RefinementMode

Package	Description
ffx.realspace	The Real Space package implements real space structure refinement.
ffx.realspace.cli	The Real Space CLI package defines options for PicoCLI command line scripts.
ffx.xray	The X-ray package implements support for X-ray and Neutron refinement.
ffx.xray.cli	The X-ray CLI package defines options for PicoCLI command line scripts.

Uses of RefinementMinimize.RefinementMode in ffx.realspace

Methods in ffx.realspace that return RefinementMinimize.RefinementMode

Modifier and Type	Method	Description
RefinementMinimize.RefinementMode	RealSpaceEnergy.getRefinementMode()	Getter for the field refinementMode.

Methods in ffx.realspace with parameters of type RefinementMinimize.RefinementMode

Modifier and Type	Method	Description
void	RealSpaceEnergy.setRefinementMode(RefinementMinimize.RefinementMode refinementMode)	Setter for the field refinementMode.

Constructors in ffx.realspace with parameters of type RefinementMinimize.RefinementMode

Modifier	Constructor	Description
	RealSpaceEnergy(RealSpaceData realSpaceData, int nxyz, int nb, int nocc, RefinementMinimize.RefinementMode refinementMode)	Diffraction data energy target

Uses of RefinementMinimize.RefinementMode in ffx.realspace.cli

Fields in ffx.realspace.cli declared as RefinementMinimize.RefinementMode

Modifier and Type	Field	Description
RefinementMinimize.RefinementMode	RealSpaceOptions.refinementMode	The refinement mode to use.

Uses of RefinementMinimize.RefinementMode in ffx.xray

Methods in ffx.xray that return RefinementMinimize.RefinementMode

Modifier and Type	Method	Description
RefinementMinimize.RefinementMode	XRayEnergy.getRefinementMode()	Getter for the field refinementMode.
static RefinementMinimize.RefinementMode	RefinementMinimize.parseMode(String str)	Parse a string into a refinement mode.
static RefinementMinimize.RefinementMode	RefinementMinimize.RefinementMode.valueOf(String name)	Returns the enum constant of this class with the specified name.
static RefinementMinimize.RefinementMode[]	RefinementMinimize.RefinementMode.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in ffx.xray with parameters of type RefinementMinimize.RefinementMode

Modifier and Type	Method	Description
void	CrystalReciprocalSpace.computeAtomicGradients(double[][] hklData, int[] freer, int flag, RefinementMinimize.RefinementMode refinementMode)	compute inverse FFT to determine atomic gradients
void	FormFactor.rhoGrad(double[] xyz, double dfc, RefinementMinimize.RefinementMode refinementmode)	Compute the real space gradient
void	NeutronFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMinimize.RefinementMode refinementmode)	Compute the real space gradient
void	SolventBinaryFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMinimize.RefinementMode refinementmode)	Derivatives are zero or infinite for the binary model.
void	SolventGaussFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMinimize.RefinementMode refinementmode)	Compute the real space gradient
void	SolventPolyFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMinimize.RefinementMode refinementmode)	Compute the real space gradient
void	XRayFormFactor.rhoGrad(double[] xyz, double dfc, RefinementMinimize.RefinementMode refinementMode)	Compute the real space gradient
void	XRayEnergy.setRefinementMode(RefinementMinimize.RefinementMode refinementmode)	Setter for the field refinementMode.

Constructors in ffx.xray with parameters of type RefinementMinimize.RefinementMode

Modifier	Constructor	Description
	RefinementEnergy(DataContainer data, RefinementMinimize.RefinementMode refinementMode)	RefinementEnergy Constructor.
	RefinementEnergy(DataContainer data, RefinementMinimize.RefinementMode refinementMode, double[] optimizationScaling)	RefinementEnergy Constructor.
	RefinementMinimize(DataContainer data, RefinementMinimize.RefinementMode refinementmode)	constructor for refinement
	RefinementMinimize(DataContainer data, RefinementMinimize.RefinementMode refinementMode, AlgorithmListener listener)	constructor for refinement
	XRayEnergy(DiffractionData diffractionData, int nXYZ, int nB, int nOCC, RefinementMinimize.RefinementMode refinementMode)	Diffraction data energy target

Uses of RefinementMinimize.RefinementMode in ffx.xray.cli

Fields in ffx.xray.cli declared as RefinementMinimize.RefinementMode

Modifier and Type	Field	Description
protected RefinementMinimize.RefinementMode	DataRefinementOptions.refinementMode	The refinement mode to use.
RefinementMinimize.RefinementMode	XrayOptions.refinementMode	The refinement mode to use.