Uses of Interface
ffx.potential.bonded.AminoAcidUtils.SideChainType

Packages that use AminoAcidUtils.SideChainType

Package	Description
ffx.potential.bonded	The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions, etc.

Uses of AminoAcidUtils.SideChainType in ffx.potential.bonded

Classes in ffx.potential.bonded that implement AminoAcidUtils.SideChainType

Modifier and Type	Class	Description
static enum	AminoAcidUtils.AIB	Constant AIB
static enum	AminoAcidUtils.ALA	Constant ALA
static enum	AminoAcidUtils.ARG	Constant ARG
static enum	AminoAcidUtils.ASD	Constant ASD
static enum	AminoAcidUtils.ASH	Constant ASH
static enum	AminoAcidUtils.ASN	Constant ASN
static enum	AminoAcidUtils.ASP	Constant ASP
static enum	AminoAcidUtils.CYD	Constant CYD
static enum	AminoAcidUtils.CYS	Constant CYS
static enum	AminoAcidUtils.CYX	Constant CYS
static enum	AminoAcidUtils.GLD	Constant GLD
static enum	AminoAcidUtils.GLH	Constant GLH
static enum	AminoAcidUtils.GLN	Constant GlutamineAtomNames
static enum	AminoAcidUtils.GLU	Constant GLU
static enum	AminoAcidUtils.HID	Constant HID
static enum	AminoAcidUtils.HIE	Constant HIE
static enum	AminoAcidUtils.HIS	Constant HistidineAtoms
static enum	AminoAcidUtils.ILE	Constant ILE
static enum	AminoAcidUtils.LEU	Constant LEU
static enum	AminoAcidUtils.LYD	Constant LYD
static enum	AminoAcidUtils.LYS	Constant LYS
static enum	AminoAcidUtils.MET	Constant MethionineAtomNames
static enum	AminoAcidUtils.ORN	Constant ORN
static enum	AminoAcidUtils.PCA	Constant PCA
static enum	AminoAcidUtils.PHE	Constant PHE
static enum	AminoAcidUtils.PRO	Constant PRO
static enum	AminoAcidUtils.SER	Constant SER
static enum	AminoAcidUtils.THR	Constant THR
static enum	AminoAcidUtils.TRP	Constant TRP
static enum	AminoAcidUtils.TYD	Constant TYD
static enum	AminoAcidUtils.TYR	Constant TYR
static enum	AminoAcidUtils.VAL	Constant VAL

Methods in ffx.potential.bonded with parameters of type AminoAcidUtils.SideChainType

Modifier and Type	Method	Description
static Atom	BondedUtils.buildH(MSGroup residue, AminoAcidUtils.SideChainType atomName, Atom ia, double bond, Atom ib, double angle1, Atom ic, double angle2, int chiral, ForceField forceField, List<Bond> bondList)	Build a hydrogen atom.
static Atom	BondedUtils.buildHeavy(MSGroup residue, AminoAcidUtils.SideChainType atomName, Atom ia, double bond, Atom ib, double angle1, Atom ic, double angle2, int chiral, ForceField forceField, List<Bond> bondList)	Build a heavy atom.