Uses of Interface
ffx.potential.bonded.AminoAcidUtils.SideChainType
Packages that use AminoAcidUtils.SideChainType
Package
Description
The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions,
etc.
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Uses of AminoAcidUtils.SideChainType in ffx.potential.bonded
Classes in ffx.potential.bonded that implement AminoAcidUtils.SideChainTypeModifier and TypeClassDescriptionstatic enum
ConstantAIB
static enum
ConstantALA
static enum
ConstantARG
static enum
ConstantASD
static enum
ConstantASH
static enum
ConstantASN
static enum
ConstantASP
static enum
ConstantCYD
static enum
ConstantCYS
static enum
ConstantCYS
static enum
ConstantGLD
static enum
ConstantGLH
static enum
ConstantGlutamineAtomNames
static enum
ConstantGLU
static enum
ConstantHID
static enum
ConstantHIE
static enum
ConstantHistidineAtoms
static enum
ConstantILE
static enum
ConstantLEU
static enum
ConstantLYD
static enum
ConstantLYS
static enum
ConstantMethionineAtomNames
static enum
ConstantORN
static enum
ConstantPCA
static enum
ConstantPHE
static enum
ConstantPRO
static enum
ConstantSER
static enum
ConstantTHR
static enum
ConstantTRP
static enum
ConstantTYD
static enum
ConstantTYR
static enum
ConstantVAL
Methods in ffx.potential.bonded with parameters of type AminoAcidUtils.SideChainTypeModifier and TypeMethodDescriptionstatic Atom
BondedUtils.buildH
(MSGroup residue, AminoAcidUtils.SideChainType atomName, Atom ia, double bond, Atom ib, double angle1, Atom ic, double angle2, int chiral, ForceField forceField, List<Bond> bondList) Build a hydrogen atom.static Atom
BondedUtils.buildHeavy
(MSGroup residue, AminoAcidUtils.SideChainType atomName, Atom ia, double bond, Atom ib, double angle1, Atom ic, double angle2, int chiral, ForceField forceField, List<Bond> bondList) Build a heavy atom.