Uses of Class
ffx.crystal.ReflectionList

Packages that use ReflectionList

Package	Description
ffx.crystal	The Crystal package implements space group symmetry and periodic boundary condition support.
ffx.xray	The X-ray package implements support for X-ray and Neutron refinement.
ffx.xray.parsers	The Parsers package reads CNS files and reads/writes MTZ files.

Uses of ReflectionList in ffx.crystal

Constructors in ffx.crystal with parameters of type ReflectionList

Modifier	Constructor	Description
	ReflectionSpline(ReflectionList reflectionList, int nParams)	Constructor for ReflectionSpline.

Uses of ReflectionList in ffx.xray

Methods in ffx.xray that return ReflectionList

Modifier and Type	Method	Description
ReflectionList[]	DiffractionData.getReflectionList()	Getter for the field reflectionList.

Constructors in ffx.xray with parameters of type ReflectionList

Modifier	Constructor	Description
	CrystalReciprocalSpace(ReflectionList reflectionList, Atom[] atoms, ParallelTeam fftTeam, ParallelTeam parallelTeam)	Crystal Reciprocal Space constructor, assumes this is not a bulk solvent mask and is not a neutron data set
	CrystalReciprocalSpace(ReflectionList reflectionList, Atom[] atoms, ParallelTeam fftTeam, ParallelTeam parallelTeam, boolean solventMask)	Crystal Reciprocal Space constructor, assumes this is not a neutron data set and implements a polynomial bulk solvent mask if needed
	CrystalReciprocalSpace(ReflectionList reflectionList, Atom[] atoms, ParallelTeam fftTeam, ParallelTeam parallelTeam, boolean solventMask, boolean neutron)	Crystal Reciprocal Space constructor, assumes a polynomial bulk solvent mask if needed
	CrystalReciprocalSpace(ReflectionList reflectionlist, Atom[] atoms, ParallelTeam fftTeam, ParallelTeam parallelTeam, boolean solventMask, boolean neutron, CrystalReciprocalSpace.SolventModel solventModel, CrystalReciprocalSpace.GridMethod gridMethod)	Crystal Reciprocal Space constructor, all parameters provided
	DiffractionRefinementData(org.apache.commons.configuration2.CompositeConfiguration properties, ReflectionList reflectionList)	allocate data given a ReflectionList
	ScaleBulkMinimize(ReflectionList reflectionList, DiffractionRefinementData refinementData, CrystalReciprocalSpace crystalReciprocalSpace, ParallelTeam parallelTeam)	Constructor for ScaleBulkMinimize.
	SplineMinimize(ReflectionList reflectionList, DiffractionRefinementData refinementData, double[] x, int type)	Constructor for SplineMinimize.

Uses of ReflectionList in ffx.xray.parsers

Methods in ffx.xray.parsers that return ReflectionList

Modifier and Type	Method	Description
ReflectionList	CIFFilter.getReflectionList(File cifFile)	Get reflection information from a reflection file.
ReflectionList	CIFFilter.getReflectionList(File cifFile, org.apache.commons.configuration2.CompositeConfiguration properties)	Get reflection information from a reflection file.
ReflectionList	CNSFilter.getReflectionList(File cnsFile)	Get reflection information from a reflection file.
ReflectionList	CNSFilter.getReflectionList(File cnsFile, org.apache.commons.configuration2.CompositeConfiguration properties)	Get reflection information from a reflection file.
ReflectionList	DiffractionFileFilter.getReflectionList(File file)	Get reflection information from a reflection file.
ReflectionList	DiffractionFileFilter.getReflectionList(File file, org.apache.commons.configuration2.CompositeConfiguration properties)	Get reflection information from a reflection file.
ReflectionList	MTZFilter.getReflectionList(File mtzFile)	Get reflection information from a reflection file.
ReflectionList	MTZFilter.getReflectionList(File mtzFile, org.apache.commons.configuration2.CompositeConfiguration properties)	Get reflection information from a reflection file.

Methods in ffx.xray.parsers with parameters of type ReflectionList

Modifier and Type	Method	Description
void	MTZFilter.averageFcs(File mtzFile1, File mtzFile2, ReflectionList reflectionlist, int iter, org.apache.commons.configuration2.CompositeConfiguration properties)	Average the computed structure factors for two systems.
boolean	CIFFilter.readFile(File cifFile, ReflectionList reflectionList, DiffractionRefinementData refinementData, org.apache.commons.configuration2.CompositeConfiguration properties)	Read in reflection file.
boolean	CNSFilter.readFile(File cnsFile, ReflectionList reflectionList, DiffractionRefinementData refinementData, org.apache.commons.configuration2.CompositeConfiguration properties)	Read in reflection file.
boolean	DiffractionFileFilter.readFile(File file, ReflectionList reflectionList, DiffractionRefinementData refinementData, org.apache.commons.configuration2.CompositeConfiguration properties)	Read in reflection file.
boolean	MTZFilter.readFile(File mtzFile, ReflectionList reflectionList, DiffractionRefinementData refinementData, org.apache.commons.configuration2.CompositeConfiguration properties)	Read in reflection file.

Constructors in ffx.xray.parsers with parameters of type ReflectionList

Modifier	Constructor	Description
	MTZWriter(ReflectionList reflectionList, DiffractionRefinementData refinementData, String filename)	Constructor for MTZWriter.
	MTZWriter(ReflectionList reflectionList, DiffractionRefinementData refinementData, String filename, int mtzType)	Constructor for MTZWriter.