Uses of Class
ffx.algorithms.thermodynamics.HistogramSettings

Packages that use HistogramSettings

Package	Description
ffx.algorithms.cli	The Algorithms CLI package defines options for PicoCLI command line scripts.
ffx.algorithms.thermodynamics	The Thermodynamics package computes free energy differences using Orthogonal Space Tempering (OST) sampling via pure Java or OpenMM (via Monte Carlo OST).

Uses of HistogramSettings in ffx.algorithms.cli

Methods in ffx.algorithms.cli that return HistogramSettings

Modifier and Type	Method	Description
HistogramSettings	OSTOptions.generateHistogramSettings(File histogramRestartFile, String lambdaFileName, org.apache.commons.configuration2.CompositeConfiguration compositeConfiguration, int index, DynamicsOptions dynamicsOptions, LambdaParticleOptions lambdaParticleOptions, boolean writeIndependent, boolean async)	Constructs histogram settings based on stored values.
HistogramSettings	OSTOptions.generateHistogramSettings(File histogramRestartFile, String lambdaFileName, org.apache.commons.configuration2.CompositeConfiguration compositeConfiguration, int index, DynamicsOptions dynamicsOptions, LambdaParticleOptions lambdaParticleOptions, boolean writeIndependent, boolean async, boolean overrideHistogram)	Constructs histogram settings based on stored values.

Uses of HistogramSettings in ffx.algorithms.thermodynamics

Methods in ffx.algorithms.thermodynamics with parameters of type HistogramSettings

Modifier and Type	Method	Description
void	OrthogonalSpaceTempering.addHistogram(HistogramSettings settings)	Add an alternate Histogram this OST can use.

Constructors in ffx.algorithms.thermodynamics with parameters of type HistogramSettings

Modifier	Constructor	Description
	OrthogonalSpaceTempering(LambdaInterface lambdaInterface, CrystalPotential potential, File lambdaFile, HistogramSettings histoSettings, org.apache.commons.configuration2.CompositeConfiguration properties, double temperature, double dt, double printInterval, double saveInterval, boolean asynchronous, boolean resetNumSteps, AlgorithmListener algorithmListener)	OST Constructor.
	OrthogonalSpaceTempering(LambdaInterface lambdaInterface, CrystalPotential potential, File lambdaFile, HistogramSettings histoSettings, org.apache.commons.configuration2.CompositeConfiguration properties, double temperature, double dt, double printInterval, double saveInterval, boolean asynchronous, boolean resetNumSteps, AlgorithmListener algorithmListener, double lambdaWriteOut)	OST Constructor.