Uses of Enum Class
ffx.algorithms.dynamics.thermostats.ThermostatEnum

Packages that use ThermostatEnum

Package	Description
ffx.algorithms.cli	The Algorithms CLI package defines options for PicoCLI command line scripts.
ffx.algorithms.dynamics	The Dynamics package implements molecular and stochastic dynamics using a pure Java code path and via OpenMM.
ffx.algorithms.dynamics.thermostats	The Thermostats package implements thermostats for molecular dynamics simulations.
ffx.algorithms.optimize.anneal

Uses of ThermostatEnum in ffx.algorithms.cli

Fields in ffx.algorithms.cli declared as ThermostatEnum

Modifier and Type	Field	Description
ThermostatEnum	DynamicsOptions.thermostat	Thermostat.

Methods in ffx.algorithms.cli with parameters of type ThermostatEnum

Modifier and Type	Method	Description
void	DynamicsOptions.setThermostat(ThermostatEnum thermostat)	Set the thermostat.

Uses of ThermostatEnum in ffx.algorithms.dynamics

Methods in ffx.algorithms.dynamics with parameters of type ThermostatEnum

Modifier and Type	Method	Description
static MolecularDynamics	MolecularDynamics.dynamicsFactory(MolecularAssembly assembly, Potential potentialEnergy, AlgorithmListener listener, ThermostatEnum requestedThermostat, IntegratorEnum requestedIntegrator)	Method that determines whether a dynamics is done by the java implementation native to ffx or the OpenMM implementation
static MolecularDynamics	MolecularDynamics.dynamicsFactory(MolecularAssembly assembly, Potential potentialEnergy, AlgorithmListener listener, ThermostatEnum requestedThermostat, IntegratorEnum requestedIntegrator, MDEngine engine)	dynamicsFactory.

Constructors in ffx.algorithms.dynamics with parameters of type ThermostatEnum

Modifier	Constructor	Description
	MolecularDynamics(MolecularAssembly assembly, Potential potentialEnergy, AlgorithmListener listener, ThermostatEnum requestedThermostat, IntegratorEnum requestedIntegrator)	Constructor for MolecularDynamics.
	MolecularDynamicsOpenMM(MolecularAssembly assembly, Potential potential, AlgorithmListener listener, ThermostatEnum thermostat, IntegratorEnum integrator)	Constructs an MolecularDynamicsOpenMM object, to perform molecular dynamics using native OpenMM routines, avoiding the cost of communicating coordinates, gradients, and energies back and forth across the PCI bus.

Uses of ThermostatEnum in ffx.algorithms.dynamics.thermostats

Fields in ffx.algorithms.dynamics.thermostats declared as ThermostatEnum

Modifier and Type	Field	Description
protected ThermostatEnum	Thermostat.name	The identity of this Thermostat.

Methods in ffx.algorithms.dynamics.thermostats that return ThermostatEnum

Modifier and Type	Method	Description
static ThermostatEnum	Thermostat.parseThermostat(String str)	Parse a string into a Thermostat enumeration.
static ThermostatEnum	ThermostatEnum.valueOf(String name)	Returns the enum constant of this class with the specified name.
static ThermostatEnum[]	ThermostatEnum.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Uses of ThermostatEnum in ffx.algorithms.optimize.anneal

Constructors in ffx.algorithms.optimize.anneal with parameters of type ThermostatEnum

Modifier	Constructor	Description
	SimulatedAnnealing(MolecularAssembly molecularAssembly, Potential potentialEnergy, AlgorithmListener algorithmListener, ThermostatEnum requestedThermostat, IntegratorEnum requestedIntegrator, AnnealingSchedule annealingSchedule, long mdSteps, double timeStep, boolean reInitVelocity, File dynFile)	Constructor for SimulatedAnnealing.