Uses of Interface
ffx.algorithms.Terminatable

Packages that use Terminatable

Package	Description
ffx.algorithms.dynamics	The Dynamics package implements molecular and stochastic dynamics using a pure Java code path and via OpenMM.
ffx.algorithms.optimize	The Optimize package contains local and global optimization algorithms using pure Java and OpenMM code paths.
ffx.algorithms.optimize.anneal	The anneal package implements simulated annealing-based optimization, including an interface for annealing schedules and several concrete schedule implementations (linear, exponential, and flat-end) used to control temperature during optimization runs.
ffx.xray	The X-ray package implements support for X-ray and Neutron refinement.

Uses of Terminatable in ffx.algorithms.dynamics

Classes in ffx.algorithms.dynamics that implement Terminatable

Modifier and Type	Class	Description
class	MolecularDynamics	Run NVE, NVT, or NPT molecular dynamics.
class	MolecularDynamicsOpenMM	Runs Molecular Dynamics using OpenMM implementation
class	PhReplicaExchange	The PhReplicaExchange implements pH replica exchange.
class	ReplicaExchange	The ReplicaExchange implements temperature and lambda replica exchange methods.

Uses of Terminatable in ffx.algorithms.optimize

Classes in ffx.algorithms.optimize that implement Terminatable

Modifier and Type	Class	Description
class	CrystalMinimize	Minimize the energy of a system to an RMS gradient per atom convergence criteria.
class	Minimize	Minimize the potential energy of a system to an RMS gradient per atom convergence criteria.
class	MinimizeOpenMM	Given a Context, this class searches for a new set of particle positions that represent a local minimum of the potential energy.
class	PhMinimize	Minimize the potential energy of a system to an RMS gradient per atom convergence criteria.
class	RotamerOptimization	Optimize protein side-chain conformations and nucleic acid backbone conformations using rotamers.

Uses of Terminatable in ffx.algorithms.optimize.anneal

Classes in ffx.algorithms.optimize.anneal that implement Terminatable

Modifier and Type	Class	Description
class	SimulatedAnnealing	Run NVT molecular dynamics at a series of temperatures to optimize a structure.

Uses of Terminatable in ffx.xray

Classes in ffx.xray that implement Terminatable

Modifier and Type	Class	Description
class	RefinementMinimize	Refinement minimization class using OptimizationListener interface, constructs a RefinementEnergy object for this purpose
class	ScaleBulkMinimize	ScaleBulkMinimize class.
class	SigmaAMinimize	SigmaAMinimize class.
class	SplineMinimize	SplineMinimize class.