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Package ffx.potential.bonded
Class Summary
Class
AminoAcidUtils
AminoAcidUtils.AA
AminoAcidUtils.AIB
AminoAcidUtils.ALA
AminoAcidUtils.ARG
AminoAcidUtils.ASD
AminoAcidUtils.ASH
AminoAcidUtils.ASN
AminoAcidUtils.ASP
AminoAcidUtils.AminoAcid1
AminoAcidUtils.AminoAcid3
AminoAcidUtils.AminoAcidBackboneAtoms
AminoAcidUtils.CYD
AminoAcidUtils.CYS
AminoAcidUtils.CYX
AminoAcidUtils.GLD
AminoAcidUtils.GLH
AminoAcidUtils.GLN
AminoAcidUtils.GLU
AminoAcidUtils.GLY
AminoAcidUtils.GlycineBackboneAtoms
AminoAcidUtils.HID
AminoAcidUtils.HIE
AminoAcidUtils.HIS
AminoAcidUtils.ILE
AminoAcidUtils.LEU
AminoAcidUtils.LYD
AminoAcidUtils.LYS
AminoAcidUtils.MET
AminoAcidUtils.ORN
AminoAcidUtils.PCA
AminoAcidUtils.PHE
AminoAcidUtils.PRO
AminoAcidUtils.ProlineBackboneAtoms
AminoAcidUtils.ResiduePosition
AminoAcidUtils.SER
AminoAcidUtils.SideChainType
AminoAcidUtils.THR
AminoAcidUtils.TRP
AminoAcidUtils.TYD
AminoAcidUtils.TYR
AminoAcidUtils.VAL
Angle
AngleTorsion
Bond
BondedEnergy
BondedTerm
BondedTerm.BondedComparator
BondedUtils
ImproperTorsion
Joint
LambdaInterface
MSNode
MSRoot
Molecule
MultiResidue
NamingUtils
NamingUtils.HetAtoms
NucleicAcidUtils
NucleicAcidUtils.NA
NucleicAcidUtils.NucleicAcid1
NucleicAcidUtils.NucleicAcid3
OutOfPlaneBend
PiOrbitalTorsion
Polymer
PolymerUtils
ROLS
ROLSP
RelativeSolvation
RelativeSolvation.SolvationLibrary
RendererCache
RendererCache.ColorModel
RendererCache.ViewModel
Residue
ResidueState
RestrainDistance
RestraintTorsion
Rotamer
RotamerLibrary
RotamerLibrary.NonstandardRotLibrary
RotamerLibrary.NucleicAcidLibrary
RotamerLibrary.NucleicSugarPucker
RotamerLibrary.ProteinLibrary
RotamerLibrary.RotamerGuess
StretchBend
StretchTorsion
SturmMethod
Torsion
TorsionTorsion
UreyBradley
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
Force Field X 1.0.0-beta Reference
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Frames
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