Package ffx.utilities

Class TinkerUtils

java.lang.Object

ffx.utilities.TinkerUtils

public class TinkerUtils
extends Object

A collection of Utility methods for compatibility with Tinker.

Since:

1.0

Author:

Michael J. Schnieders

Method Summary

Modifier and Type	Method	Description
static List<Integer>	parseTinkerAtomList(List<String> tokens, int offset, int maxEntries)	Parse a Tinker selection list.
static File	previousVersion(File file)	Get the previous file based on the TINKER scheme.
static File	version(File file)	This follows the TINKER file versioning scheme.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

parseTinkerAtomList

public static List<Integer> parseTinkerAtomList(List<String> tokens,
 int offset,
 int maxEntries)

Parse a Tinker selection list. No checking is done to make sure range i

Parameters:

tokens - A list of tokens to parse.

offset - A constant offset that is added to each selected integer (i.e. an offset of -1 will index atoms from 0 to n-1).

maxEntries - The maximum number of entries to parse (e.g. "4 -9 17 23" is 3 entries). A value less than 1 includes all entries.

Returns:

A list of selected integers.

previousVersion

public static File previousVersion(File file)

Get the previous file based on the TINKER scheme.

Parameters:

file - Root file.

Returns:

New File created previously to the passed file.

version

public static File version(File file)

This follows the TINKER file versioning scheme.

Parameters:

file - File to find a version for.

Returns:

File Versioned File.