Package ffx.realspace.commands

Class Minimize

java.lang.Object

ffx.utilities.FFXCommand

ffx.algorithms.cli.AlgorithmsCommand

ffx.realspace.commands.Minimize

public class Minimize
extends AlgorithmsCommand

The Real Space Minimize script.
Usage:
ffxc realspace.Minimize [options] <filename [file2...]>

Field Summary

Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand

activeAssembly, algorithmFunctions, algorithmListener, baseDir

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
Minimize()	Minimize constructor.
Minimize(FFXBinding binding)	Minimize constructor.
Minimize(String[] args)	Minimize constructor that sets the command line arguments.

Method Summary

Modifier and Type	Method	Description
boolean	destroyPotentials()	Reclaims resources associated with all Potential objects associated with this script.
Minimize	run()	Execute this Command.

Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand

getActiveAssemblies, getActiveAssembly, getPotentials, getPotentialsFromAssemblies, init, saveDirFile, setBaseDir, updateTitle

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Minimize

public Minimize()

Minimize constructor.

Minimize

public Minimize(String[] args)

Minimize constructor that sets the command line arguments.

Parameters:

args - Command line arguments.

Minimize

public Minimize(FFXBinding binding)

Minimize constructor.

Parameters:

binding - The Binding to use.

Method Details

run

public Minimize run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.

destroyPotentials

public boolean destroyPotentials()

Description copied from class: AlgorithmsCommand

Reclaims resources associated with all Potential objects associated with this script.

Overrides:

destroyPotentials in class AlgorithmsCommand

Returns:

If all Potentials had resources reclaimed.