Uses of Package
ffx.potential.utils

Packages that use ffx.potential.utils

Package	Description
ffx.algorithms	The Algorithms package has support for local and global optimization, molecular dynamics simulations, and calculation of free energy differences.
ffx.algorithms.commands
ffx.potential.cli	The Potential CLI package defines reusable options for PicoCLI command line scripts.
ffx.potential.nonbonded.pme	The pme package implements polarization and permanent electrostatics using Particle Mesh Ewald (PME).
ffx.potential.utils	The Utils package implements core functionality needed for using the Potential package, such as opening and closing structure files, basic force field energy evaluations, etc.
ffx.ui	The UI package provides views and controllers for manipulating molecular systems.

Classes in ffx.potential.utils used by ffx.algorithms

Class	Description
PotentialsFunctions	PotentialsFunctions describes core functionality for many Force Field X algorithms and scripts, such as opening and closing structure files, basic force field energy evaluations, etc.
PotentialsUtils	PotentialsUtils implements core functionality for many Force Field X algorithms and scripts, such as opening and closing structure files, basic force field evaluations, etc.

Classes in ffx.potential.utils used by ffx.algorithms.commands

Class	Description
Clustering.Conformation	Class for cluster objects.

Classes in ffx.potential.utils used by ffx.potential.cli

Class	Description
PotentialsFunctions	PotentialsFunctions describes core functionality for many Force Field X algorithms and scripts, such as opening and closing structure files, basic force field energy evaluations, etc.

Classes in ffx.potential.utils used by ffx.potential.nonbonded.pme

Class	Description
EnergyException	This Exception class indicates an error in calculating energy or gradients.

Classes in ffx.potential.utils used by ffx.potential.utils

Class	Description
Clustering.Conformation	Class for cluster objects.
PotentialsFunctions	PotentialsFunctions describes core functionality for many Force Field X algorithms and scripts, such as opening and closing structure files, basic force field energy evaluations, etc.

Classes in ffx.potential.utils used by ffx.ui

Class	Description
PotentialsFunctions	PotentialsFunctions describes core functionality for many Force Field X algorithms and scripts, such as opening and closing structure files, basic force field energy evaluations, etc.
PotentialsUtils	PotentialsUtils implements core functionality for many Force Field X algorithms and scripts, such as opening and closing structure files, basic force field evaluations, etc.