Uses of Class
ffx.potential.utils.Clustering.Conformation

Packages that use Clustering.Conformation

Package	Description
ffx.potential.utils	The Utils package implements core functionality needed for using the Potential package, such as opening and closing structure files, basic force field energy evaluations, etc.

Uses of Clustering.Conformation in ffx.potential.utils

Methods in ffx.potential.utils that return types with arguments of type Clustering.Conformation

Modifier and Type	Method	Description
static List<org.apache.commons.math3.ml.clustering.CentroidCluster<Clustering.Conformation>>	Clustering.hierarchicalClustering(List<double[]> distanceMatrix, double threshold)	This method performs hierarchical clustering on a distance matrix.
static List<org.apache.commons.math3.ml.clustering.CentroidCluster<Clustering.Conformation>>	Clustering.iterativeClustering(List<double[]> distMatrix, int trials, double tolerance)	Perform an iterative clustering for a specified number of clusters.
static List<org.apache.commons.math3.ml.clustering.CentroidCluster<Clustering.Conformation>>	Clustering.kMeansClustering(List<double[]> distMatrix, int maxClusters, int numTrials, long seed)	Perform a k-means clustering for a specified number of clusters.

Method parameters in ffx.potential.utils with type arguments of type Clustering.Conformation

Modifier and Type	Method	Description
static void	Clustering.analyzeClusters(List<org.apache.commons.math3.ml.clustering.CentroidCluster<Clustering.Conformation>> clusters, List<Integer> repStructs, boolean verbose)	Analyze a list of CentroidClusters.