Package ffx.potential.utils

Class Loop

java.lang.Object

ffx.potential.utils.Loop

public class Loop
extends Object

Loop class.

Since:

1.0

Author:

Mallory R. Tollefson

Constructor Summary

Constructors

Constructor	Description
Loop(MolecularAssembly molecularAssembly)	Constructor for Loop.
Loop(MolecularAssembly molecularAssembly, int firstResidue, int endResidue)	Constructor for Loop.

Method Summary

Modifier and Type	Method	Description
List<double[]>	generateLoops(int firstResidue, int endResidue)	generateLoops.
List<double[]>	generateLoops(int firstResidue, int endResidue, double[] coordinates)	generateLoops.
double[][]	getRA()	getRA.
double[][]	getRC()	getRC.
double[][]	getRN()	getRN.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Loop

public Loop(MolecularAssembly molecularAssembly,
 int firstResidue,
 int endResidue)

Constructor for Loop.

Parameters:

molecularAssembly - a MolecularAssembly object.

firstResidue - a int.

endResidue - a int.

Loop

public Loop(MolecularAssembly molecularAssembly)

Constructor for Loop.

Parameters:

molecularAssembly - a MolecularAssembly object.

Method Details

generateLoops

public List<double[]> generateLoops(int firstResidue,
 int endResidue,
 double[] coordinates)

generateLoops.

Parameters:

firstResidue - a int.

endResidue - a int.

coordinates - an array of

invalid reference

double

objects.

Returns:

a List object.

generateLoops

public List<double[]> generateLoops(int firstResidue,
 int endResidue)

generateLoops.

Parameters:

firstResidue - a int.

endResidue - a int.

Returns:

a List object.

getRA

public double[][] getRA()

getRA.

Returns:

an array of

invalid reference

double

objects.

getRC

public double[][] getRC()

getRC.

Returns:

an array of

invalid reference

double

objects.

getRN

public double[][] getRN()

getRN.

Returns:

an array of

invalid reference

double

objects.