Class Loop

java.lang.Object
ffx.potential.utils.Loop

public class Loop extends Object
Loop class.
Since:
1.0
Author:
Mallory R. Tollefson
  • Constructor Details

    • Loop

      public Loop(MolecularAssembly molecularAssembly, int firstResidue, int endResidue)
      Constructor for Loop.
      Parameters:
      molecularAssembly - a MolecularAssembly object.
      firstResidue - a int.
      endResidue - a int.
    • Loop

      public Loop(MolecularAssembly molecularAssembly)
      Constructor for Loop.
      Parameters:
      molecularAssembly - a MolecularAssembly object.
  • Method Details

    • generateLoops

      public List<double[]> generateLoops(int firstResidue, int endResidue, double[] coordinates)
      generateLoops.
      Parameters:
      firstResidue - a int.
      endResidue - a int.
      coordinates - an array of
      invalid reference
      double
      objects.
      Returns:
      a List object.
    • generateLoops

      public List<double[]> generateLoops(int firstResidue, int endResidue)
      generateLoops.
      Parameters:
      firstResidue - a int.
      endResidue - a int.
      Returns:
      a List object.
    • getRA

      public double[][] getRA()
      getRA.
      Returns:
      an array of
      invalid reference
      double
      objects.
    • getRC

      public double[][] getRC()
      getRC.
      Returns:
      an array of
      invalid reference
      double
      objects.
    • getRN

      public double[][] getRN()
      getRN.
      Returns:
      an array of
      invalid reference
      double
      objects.