Uses of Enum Class
ffx.potential.nonbonded.pme.Polarization

Packages that use Polarization

Package	Description
ffx.potential.nonbonded	The Nonbonded package implements nonbonded molecular mechanics terms such as van der Waals and Particle Mesh Ewald electrostastics.
ffx.potential.nonbonded.implicit	The implicit package implements implicit solvent models and related terms, including Generalized Kirkwood (GK) electrostatics, surface area terms, dispersion/cavitation contributions, and supporting parallel regions for Born radii and field evaluation.
ffx.potential.nonbonded.pme	The pme package implements polarization and permanent electrostatics using Particle Mesh Ewald (PME).

Uses of Polarization in ffx.potential.nonbonded

Fields in ffx.potential.nonbonded declared as Polarization

Modifier and Type	Field	Description
Polarization	ParticleMeshEwald.polarization	Polarization modes include "direct", in which induced dipoles do not interact, and "mutual" that converges the self-consistent field to a tolerance specified by the "polar-eps" keyword.

Methods in ffx.potential.nonbonded that return Polarization

Modifier and Type	Method	Description
Polarization	ParticleMeshEwald.getPolarizationType()

Methods in ffx.potential.nonbonded with parameters of type Polarization

Modifier and Type	Method	Description
void	ParticleMeshEwald.setPolarization(Polarization set)	Setter for the field polarization.

Uses of Polarization in ffx.potential.nonbonded.implicit

Fields in ffx.potential.nonbonded.implicit declared as Polarization

Modifier and Type	Field	Description
protected final Polarization	GKEnergyRegion.polarization	Treatment of polarization.

Constructors in ffx.potential.nonbonded.implicit with parameters of type Polarization

Modifier	Constructor	Description
	GKEnergyRegion(int nt, Polarization polarization, GeneralizedKirkwood.NonPolarModel nonPolarModel, double surfaceTension, double probe, double electric, double soluteDieletric, double solventDieletric, double gkc, boolean gkQI)

Uses of Polarization in ffx.potential.nonbonded.pme

Methods in ffx.potential.nonbonded.pme that return Polarization

Modifier and Type	Method	Description
static Polarization	Polarization.valueOf(String name)	Returns the enum constant of this class with the specified name.
static Polarization[]	Polarization.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in ffx.potential.nonbonded.pme with parameters of type Polarization

Modifier and Type	Method	Description
void	RealSpaceEnergyRegion.init(Atom[] atoms, Crystal crystal, ExtendedSystem extendedSystem, boolean esvTerm, double[][][] coordinates, MultipoleType.MultipoleFrameDefinition[] frame, int[][] axisAtom, double[][][] globalMultipole, double[][][] titrationMultipole, double[][][] tautomerMultipole, double[][][] inducedDipole, double[][][] inducedDipoleCR, boolean[] use, int[] molecule, int[][] ip11, int[][] mask12, int[][] mask13, int[][] mask14, int[][] mask15, boolean[] isSoft, double[] ipdamp, double[] thole, RealSpaceNeighborParameters realSpaceNeighborParameters, boolean gradient, boolean lambdaTerm, boolean nnTerm, LambdaMode lambdaMode, Polarization polarization, EwaldParameters ewaldParameters, ScaleParameters scaleParameters, AlchemicalParameters alchemicalParameters, long[] realSpaceEnergyTime, AtomicDoubleArray3D grad, AtomicDoubleArray3D torque, AtomicDoubleArray3D lambdaGrad, AtomicDoubleArray3D lambdaTorque, SharedDouble shareddEdLambda, SharedDouble sharedd2EdLambda2)
void	ReciprocalEnergyRegion.init(Atom[] atoms, Crystal crystal, boolean gradient, boolean lambdaTerm, boolean esvTerm, boolean[] use, double[][][] globalMultipole, double[][][] globalFracMultipole, double[][][] titrationMultipole, double[][][] tautomerMultipole, double[][] cartMultipolePhi, double[][] fracMultipolePhi, Polarization polarization, double[][][] inducedDipole, double[][][] inducedDipoleCR, double[][] cartesianDipolePhi, double[][] cartesianDipolePhiCR, double[][] fracInducedDipolePhi, double[][] fracInducedDipolePhiCR, ReciprocalSpace reciprocalSpace, AlchemicalParameters alchemicalParameters, ExtendedSystem extendedSystem, AtomicDoubleArray3D grad, AtomicDoubleArray3D torque, AtomicDoubleArray3D lambdaGrad, AtomicDoubleArray3D lambdaTorque, SharedDouble shareddEdLambda, SharedDouble sharedd2EdLambda2)

Constructors in ffx.potential.nonbonded.pme with parameters of type Polarization

Modifier	Constructor	Description
	AlchemicalParameters(ForceField forceField, boolean lambdaTerm, boolean nnTerm, Polarization polarization)