Uses of Class
ffx.potential.AssemblyState

Packages that use AssemblyState

Package	Description
ffx.algorithms.optimize	The Optimize package contains local and global optimization algorithms using pure Java and OpenMM code paths.
ffx.potential	The Potential package implements molecular mechanics force fields with shared memory Parallel Java and via OpenMM.

Uses of AssemblyState in ffx.algorithms.optimize

Methods in ffx.algorithms.optimize that return types with arguments of type AssemblyState

Modifier and Type	Method	Description
ArrayList<AssemblyState>	ConformationScan.getStates()
List<AssemblyState>	TorsionSearch.getStates()	List of states in order of lowest to highest energy.
ArrayList<AssemblyState>	ConformationScan.getStatesAroundAverage(double averageE, double radialCutoff)
ArrayList<AssemblyState>	ConformationScan.getStatesFilteredByRMSD(double rmsdCutoff)
ArrayList<AssemblyState>	ConformationScan.getStatesWithinEnergy(double energy)

Uses of AssemblyState in ffx.potential

Methods in ffx.potential that return AssemblyState

Modifier and Type	Method	Description
static AssemblyState	AssemblyState.copyState(AssemblyState state)	Copies an AssemblyState.

Methods in ffx.potential with parameters of type AssemblyState

Modifier and Type	Method	Description
static AssemblyState	AssemblyState.copyState(AssemblyState state)	Copies an AssemblyState.