Uses of Class
ffx.potential.bonded.Polymer

Packages that use Polymer

Package	Description
ffx.potential	The Potential package implements molecular mechanics force fields with shared memory Parallel Java and via OpenMM.
ffx.potential.bonded	The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions, etc.

Uses of Polymer in ffx.potential

Methods in ffx.potential that return Polymer

Modifier and Type	Method	Description
Polymer	MolecularAssembly.getChain(String name)	getChain
Polymer[]	MolecularAssembly.getChains()	getChains
Polymer	MolecularAssembly.getPolymer(Character chainID, String segID, boolean create)	getPolymer

Uses of Polymer in ffx.potential.bonded

Methods in ffx.potential.bonded with parameters of type Polymer

Modifier and Type	Method	Description
static void	RotamerLibrary.initializeDefaultAtomicCoordinates(Polymer[] polymers)	Initializes default coordinates (presently PDB coordinates) for key atoms in all nucleic acid Residues.