Uses of Class
ffx.algorithms.thermodynamics.RepExOST
Package
Description
The Thermodynamics package computes free energy differences using Orthogonal Space Tempering
(OST) sampling via pure Java or OpenMM (via Monte Carlo OST).
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Uses of RepExOST in ffx.algorithms.thermodynamics
Modifier and TypeMethodDescriptionstatic RepExOST
RepExOST.repexMC
(OrthogonalSpaceTempering orthogonalSpaceTempering, MonteCarloOST monteCarloOST, DynamicsOptions dynamicsOptions, OSTOptions ostOptions, org.apache.commons.configuration2.CompositeConfiguration compositeConfiguration, String fileType, boolean twoStep, double repexInterval) Construct a RepExOST for Monte Carlo orthogonal space tempering.static RepExOST
RepExOST.repexMD
(OrthogonalSpaceTempering orthogonalSpaceTempering, MolecularDynamics molecularDynamics, DynamicsOptions dynamicsOptions, OSTOptions ostOptions, org.apache.commons.configuration2.CompositeConfiguration compositeConfiguration, String fileType, double repexInterval) Construct a RepExOST for Molecular Dynamics orthogonal space tempering.