Uses of Class
ffx.algorithms.optimize.manybody.DistanceMatrix.NeighborDistances

Packages that use DistanceMatrix.NeighborDistances

Package	Description
ffx.algorithms.optimize.manybody	The manybody package implements many-body rotamer optimization infrastructure, including distance matrices, an energy expansion (self, two-body, three-body, and four-body), Dead-end elimination criteria, Goldstein elimination criteria, and supporting data structures for efficient optimization.

Uses of DistanceMatrix.NeighborDistances in ffx.algorithms.optimize.manybody

Methods in ffx.algorithms.optimize.manybody with parameters of type DistanceMatrix.NeighborDistances

Modifier and Type	Method	Description
void	DistanceRegion.init(DistanceMatrix dM, MolecularAssembly molecularAssembly, Residue[] allResiduesArray, AlgorithmListener algorithmListener, DistanceMatrix.NeighborDistances[][] distanceMatrix)