Package ffx.algorithms.optimize.manybody

Class DistanceMatrix.NeighborDistances

java.lang.Object

ffx.algorithms.optimize.manybody.DistanceMatrix.NeighborDistances

Enclosing class:

DistanceMatrix

public class DistanceMatrix.NeighborDistances
extends Object

Store all neighbors of a residue / rotamer pair.

Constructor Summary

Constructors

Constructor	Description
NeighborDistances(int i, int ri)	Constructor.

Method Summary

Modifier and Type	Method	Description
double	getDistance(int j, int rj)	Get a distance.
void	storeDistance(int j, int rj, double distance)	Store a distance.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NeighborDistances

public NeighborDistances(int i,
 int ri)

Constructor.

Parameters:

i - The residue index.

ri - The rotamer index.

Method Details

storeDistance

public void storeDistance(int j,
 int rj,
 double distance)

Store a distance.

Parameters:

j - The residue index.

rj - The rotamer index.

distance - The distance.

getDistance

public double getDistance(int j,
 int rj)

Get a distance.

Parameters:

j - The residue index.

rj - The rotamer index.

Returns:

The distance.