Package ffx.algorithms.commands.test

Class SortXPH

java.lang.Object

ffx.utilities.FFXCommand

ffx.algorithms.cli.AlgorithmsCommand

ffx.algorithms.commands.test.SortXPH

public class SortXPH
extends AlgorithmsCommand

The SortXPH command unwinds .ARC files from CpHMD runs.
Usage:
ffxc test.SortXPH [options] <structures1> <structures2>

Field Summary

Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand

activeAssembly, algorithmFunctions, algorithmListener, baseDir

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
SortXPH()	SortXPH Constructor.
SortXPH(FFXBinding binding)	SortXPH Constructor.
SortXPH(String[] args)	SortXPH constructor that sets the command line arguments.

Method Summary

Modifier and Type	Method	Description
SortXPH	run()	Execute this Command.
void	setProperties(org.apache.commons.configuration2.CompositeConfiguration additionalProps)	Sets an optional Configuration with additional properties.

Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand

destroyPotentials, getActiveAssemblies, getActiveAssembly, getPotentials, getPotentialsFromAssemblies, init, saveDirFile, setBaseDir, updateTitle

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SortXPH

public SortXPH()

SortXPH Constructor.

SortXPH

public SortXPH(FFXBinding binding)

SortXPH Constructor.

Parameters:

binding - The Binding to use.

SortXPH

public SortXPH(String[] args)

SortXPH constructor that sets the command line arguments.

Parameters:

args - Command line arguments.

Method Details

setProperties

public void setProperties(org.apache.commons.configuration2.CompositeConfiguration additionalProps)

Sets an optional Configuration with additional properties.

Parameters:

additionalProps - additional properties

run

public SortXPH run()

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.