Package ffx.algorithms.commands.test

Class IdentifyRotamers

java.lang.Object

ffx.utilities.FFXCommand

ffx.algorithms.cli.AlgorithmsCommand

ffx.algorithms.commands.test.IdentifyRotamers

public class IdentifyRotamers
extends AlgorithmsCommand

The IdentifyRotamers script attempts to identify which rotamer each Residue in the system is in.
Usage:
ffxc test.IdentifyRotamers [options] <filename>

Field Summary

Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand

activeAssembly, algorithmFunctions, algorithmListener, baseDir

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
IdentifyRotamers()	IdentifyRotamers Constructor.
IdentifyRotamers(FFXBinding binding)	IdentifyRotamers Constructor.
IdentifyRotamers(String[] args)	IdentifyRotamers constructor that sets the command line arguments.

Method Summary

Modifier and Type	Method	Description
IdentifyRotamers	run()	Execute this Command.

Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand

destroyPotentials, getActiveAssemblies, getActiveAssembly, getPotentials, getPotentialsFromAssemblies, init, saveDirFile, setBaseDir, updateTitle

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

IdentifyRotamers

public IdentifyRotamers()

IdentifyRotamers Constructor.

IdentifyRotamers

public IdentifyRotamers(FFXBinding binding)

IdentifyRotamers Constructor.

Parameters:

binding - The Binding to use.

IdentifyRotamers

public IdentifyRotamers(String[] args)

IdentifyRotamers constructor that sets the command line arguments.

Parameters:

args - Command line arguments.

Method Details

run

public IdentifyRotamers run()

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.