Package ffx.algorithms.commands
Class SortArc
java.lang.Object
ffx.utilities.FFXCommand
ffx.algorithms.cli.AlgorithmsCommand
ffx.algorithms.commands.SortArc
The SortArc script sort Monte Carlo archive files by lambda value. It presently assumes
that the number of files composing the first end of the window equals the number of files
composing the other end.
Usage:
ffxc SortArc [options] <structures1> <structures2>
Usage:
ffxc SortArc [options] <structures1> <structures2>
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Field Summary
Fields inherited from class ffx.algorithms.cli.AlgorithmsCommand
activeAssembly, algorithmFunctions, algorithmListener, baseDir
Fields inherited from class ffx.utilities.FFXCommand
args, binding, color, help, logger, parseResult, version
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Constructor Summary
ConstructorsConstructorDescriptionSortArc()
SortArc Constructor.SortArc
(FFXBinding binding) SortArc Constructor.SortArc constructor that sets the command line arguments. -
Method Summary
Modifier and TypeMethodDescriptionReturns a List of all Potential objects associated with this script.run()
Execute this Command.void
setProperties
(org.apache.commons.configuration2.CompositeConfiguration additionalProps) Sets an optional Configuration with additional properties.Methods inherited from class ffx.algorithms.cli.AlgorithmsCommand
destroyPotentials, getActiveAssemblies, getActiveAssembly, init, saveDirFile, setActiveAssembly, setBaseDir, updateTitle
Methods inherited from class ffx.utilities.FFXCommand
getCommand, helpString, listCommands, setBinding
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Constructor Details
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SortArc
public SortArc()SortArc Constructor. -
SortArc
SortArc Constructor.- Parameters:
binding
- The Binding to use.
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SortArc
SortArc constructor that sets the command line arguments.- Parameters:
args
- Command line arguments.
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Method Details
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setProperties
public void setProperties(org.apache.commons.configuration2.CompositeConfiguration additionalProps) Sets an optional Configuration with additional properties.- Parameters:
additionalProps
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run
Description copied from class:FFXCommand
Execute this Command.- Overrides:
run
in classFFXCommand
- Returns:
- The current FFXCommand.
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getPotentials
Description copied from class:AlgorithmsCommand
Returns a List of all Potential objects associated with this script.- Overrides:
getPotentials
in classAlgorithmsCommand
- Returns:
- All Potentials. Sometimes empty, never null.
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