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1   // ******************************************************************************
2   //
3   // Title:       Force Field X.
4   // Description: Force Field X - Software for Molecular Biophysics.
5   // Copyright:   Copyright (c) Michael J. Schnieders 2001-2025.
6   //
7   // This file is part of Force Field X.
8   //
9   // Force Field X is free software; you can redistribute it and/or modify it
10  // under the terms of the GNU General Public License version 3 as published by
11  // the Free Software Foundation.
12  //
13  // Force Field X is distributed in the hope that it will be useful, but WITHOUT
14  // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
15  // FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
16  // details.
17  //
18  // You should have received a copy of the GNU General Public License along with
19  // Force Field X; if not, write to the Free Software Foundation, Inc., 59 Temple
20  // Place, Suite 330, Boston, MA 02111-1307 USA
21  //
22  // Linking this library statically or dynamically with other modules is making a
23  // combined work based on this library. Thus, the terms and conditions of the
24  // GNU General Public License cover the whole combination.
25  //
26  // As a special exception, the copyright holders of this library give you
27  // permission to link this library with independent modules to produce an
28  // executable, regardless of the license terms of these independent modules, and
29  // to copy and distribute the resulting executable under terms of your choice,
30  // provided that you also meet, for each linked independent module, the terms
31  // and conditions of the license of that module. An independent module is a
32  // module which is not derived from or based on this library. If you modify this
33  // library, you may extend this exception to your version of the library, but
34  // you are not obligated to do so. If you do not wish to do so, delete this
35  // exception statement from your version.
36  //
37  // ******************************************************************************
38  package ffx.openmm;
39  
40  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_create;
41  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_destroy;
42  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_getDefaultCollisionFrequency;
43  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_getDefaultTemperature;
44  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_getRandomNumberSeed;
45  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_setDefaultCollisionFrequency;
46  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_setDefaultTemperature;
47  import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_setRandomNumberSeed;
48  
49  /**
50   * This class uses the Andersen method to maintain constant temperature.
51   */
52  public class AndersenThermostat extends Force {
53  
54    /**
55     * OpenMM AndersenThermostat constructor.
56     *
57     * @param temperature the default temperature of the heat bath (in Kelvin).
58     * @param frequency   the default collision frequency (in 1/ps)
59     */
60    public AndersenThermostat(double temperature, double frequency) {
61      pointer = OpenMM_AndersenThermostat_create(temperature, frequency);
62    }
63  
64    /**
65     * Set the default temperature of the heat bath. This will affect any new Contexts
66     * you create, but not ones that already exist.
67     *
68     * @param temperature the default temperature of the heat bath (in Kelvin).
69     */
70    public void setDefaultTemperature(double temperature) {
71      OpenMM_AndersenThermostat_setDefaultTemperature(pointer, temperature);
72    }
73  
74    /**
75     * Get the default temperature of the heat bath (in Kelvin).
76     *
77     * @return the default temperature of the heat bath, measured in Kelvin.
78     */
79    public double getDefaultTemperature() {
80      return OpenMM_AndersenThermostat_getDefaultTemperature(pointer);
81    }
82  
83    /**
84     * Set the default collision frequency. This will affect any new Contexts you create,
85     * but not ones that already exist.
86     *
87     * @param frequency the default collision frequency (in 1/ps).
88     */
89    public void setDefaultCollisionFrequency(double frequency) {
90      OpenMM_AndersenThermostat_setDefaultCollisionFrequency(pointer, frequency);
91    }
92  
93    /**
94     * Get the default collision frequency (in 1/ps).
95     *
96     * @return the default collision frequency (in 1/ps).
97     */
98    public double getDefaultCollisionFrequency() {
99      return OpenMM_AndersenThermostat_getDefaultCollisionFrequency(pointer);
100   }
101 
102   /**
103    * Set the random number seed.  The precise meaning of this parameter is undefined, and is left up
104    * to each Platform to interpret in an appropriate way.  It is guaranteed that if two simulations
105    * are run with different random number seeds, the sequence of collisions will be different.  On
106    * the other hand, no guarantees are made about the behavior of simulations that use the same seed.
107    * In particular, Platforms are permitted to use non-deterministic algorithms which produce different
108    * results on successive runs, even if those runs were initialized identically.
109    * <p>
110    * If seed is set to 0 (which is the default value assigned), a unique seed is chosen when a Context
111    * is created from this Force. This is done to ensure that each Context receives unique random seeds
112    * without you needing to set them explicitly.
113    *
114    * @param seed the random number seed.
115    */
116   public void setRandomNumberSeed(int seed) {
117     OpenMM_AndersenThermostat_setRandomNumberSeed(pointer, seed);
118   }
119 
120   /**
121    * Get the random number seed. See setRandomNumberSeed() for details.
122    */
123   public int getRandomNumberSeed() {
124     return OpenMM_AndersenThermostat_getRandomNumberSeed(pointer);
125   }
126 
127   /**
128    * Returns whether this force makes use of periodic boundary conditions.
129    *
130    * @returns the Andersen Thermostat always returns false.
131    */
132   public boolean usesPeriodicBoundaryConditions() {
133     return false;
134   }
135 
136   /**
137    * Destroy the force.
138    */
139   public void destroy() {
140     if (pointer != null) {
141       OpenMM_AndersenThermostat_destroy(pointer);
142       pointer = null;
143     }
144   }
145 }