1 // ******************************************************************************
2 //
3 // Title: Force Field X.
4 // Description: Force Field X - Software for Molecular Biophysics.
5 // Copyright: Copyright (c) Michael J. Schnieders 2001-2025.
6 //
7 // This file is part of Force Field X.
8 //
9 // Force Field X is free software; you can redistribute it and/or modify it
10 // under the terms of the GNU General Public License version 3 as published by
11 // the Free Software Foundation.
12 //
13 // Force Field X is distributed in the hope that it will be useful, but WITHOUT
14 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
15 // FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
16 // details.
17 //
18 // You should have received a copy of the GNU General Public License along with
19 // Force Field X; if not, write to the Free Software Foundation, Inc., 59 Temple
20 // Place, Suite 330, Boston, MA 02111-1307 USA
21 //
22 // Linking this library statically or dynamically with other modules is making a
23 // combined work based on this library. Thus, the terms and conditions of the
24 // GNU General Public License cover the whole combination.
25 //
26 // As a special exception, the copyright holders of this library give you
27 // permission to link this library with independent modules to produce an
28 // executable, regardless of the license terms of these independent modules, and
29 // to copy and distribute the resulting executable under terms of your choice,
30 // provided that you also meet, for each linked independent module, the terms
31 // and conditions of the license of that module. An independent module is a
32 // module which is not derived from or based on this library. If you modify this
33 // library, you may extend this exception to your version of the library, but
34 // you are not obligated to do so. If you do not wish to do so, delete this
35 // exception statement from your version.
36 //
37 // ******************************************************************************
38 package ffx.openmm;
39
40 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_create;
41 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_destroy;
42 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_getDefaultCollisionFrequency;
43 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_getDefaultTemperature;
44 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_getRandomNumberSeed;
45 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_setDefaultCollisionFrequency;
46 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_setDefaultTemperature;
47 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_setRandomNumberSeed;
48 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_AndersenThermostat_usesPeriodicBoundaryConditions;
49 import static edu.uiowa.jopenmm.OpenMMLibrary.OpenMM_Boolean.OpenMM_False;
50
51 /**
52 * This class uses the Andersen method to maintain constant temperature.
53 */
54 public class AndersenThermostat extends Force {
55
56 /**
57 * Create an AndersenThermostat.
58 *
59 * @param defaultTemperature the default temperature of the heat bath (in Kelvin)
60 * @param defaultCollisionFrequency the default collision frequency (in 1/ps)
61 */
62 public AndersenThermostat(double defaultTemperature, double defaultCollisionFrequency) {
63 super(OpenMM_AndersenThermostat_create(defaultTemperature, defaultCollisionFrequency));
64 }
65
66 /**
67 * Destroy the force.
68 */
69 @Override
70 public void destroy() {
71 if (pointer != null) {
72 OpenMM_AndersenThermostat_destroy(pointer);
73 pointer = null;
74 }
75 }
76
77 /**
78 * Get the default collision frequency (in 1/ps).
79 *
80 * @return the default collision frequency (in 1/ps).
81 */
82 public double getDefaultCollisionFrequency() {
83 return OpenMM_AndersenThermostat_getDefaultCollisionFrequency(pointer);
84 }
85
86 /**
87 * Get the default temperature of the heat bath (in Kelvin).
88 *
89 * @return the default temperature of the heat bath, measured in Kelvin.
90 */
91 public double getDefaultTemperature() {
92 return OpenMM_AndersenThermostat_getDefaultTemperature(pointer);
93 }
94
95 /**
96 * Get the random number seed. See setRandomNumberSeed() for details.
97 */
98 public int getRandomNumberSeed() {
99 return OpenMM_AndersenThermostat_getRandomNumberSeed(pointer);
100 }
101
102 /**
103 * Set the default collision frequency. This will affect any new Contexts you create,
104 * but not ones that already exist.
105 *
106 * @param frequency the default collision frequency (in 1/ps)
107 */
108 public void setDefaultCollisionFrequency(double frequency) {
109 OpenMM_AndersenThermostat_setDefaultCollisionFrequency(pointer, frequency);
110 }
111
112 /**
113 * Set the default temperature of the heat bath. This will affect any new Contexts you create,
114 * but not ones that already exist.
115 *
116 * @param temperature the default temperature of the heat bath (in Kelvin)
117 */
118 public void setDefaultTemperature(double temperature) {
119 OpenMM_AndersenThermostat_setDefaultTemperature(pointer, temperature);
120 }
121
122 /**
123 * Set the random number seed. The precise meaning of this parameter is undefined, and is left up
124 * to each Platform to interpret in an appropriate way. It is guaranteed that if two simulations
125 * are run with different random number seeds, the sequence of collisions will be different. On
126 * the other hand, no guarantees are made about the behavior of simulations that use the same seed.
127 * In particular, Platforms are permitted to use non-deterministic algorithms which produce different
128 * results on successive runs, even if those runs were initialized identically.
129 * <p>
130 * If seed is set to 0 (which is the default value assigned), a unique seed is chosen when a Context
131 * is created from this Force. This is done to ensure that each Context receives unique random seeds
132 * without you needing to set them explicitly.
133 *
134 * @param seed the random number seed.
135 */
136 public void setRandomNumberSeed(int seed) {
137 OpenMM_AndersenThermostat_setRandomNumberSeed(pointer, seed);
138 }
139
140 /**
141 * Returns whether or not this force makes use of periodic boundary
142 * conditions.
143 *
144 * @return true if force uses PBC and false otherwise
145 */
146 @Override
147 public boolean usesPeriodicBoundaryConditions() {
148 int pbc = OpenMM_AndersenThermostat_usesPeriodicBoundaryConditions(pointer);
149 return pbc != OpenMM_False;
150 }
151 }