1 // ****************************************************************************** 2 // 3 // Title: Force Field X. 4 // Description: Force Field X - Software for Molecular Biophysics. 5 // Copyright: Copyright (c) Michael J. Schnieders 2001-2024. 6 // 7 // This file is part of Force Field X. 8 // 9 // Force Field X is free software; you can redistribute it and/or modify it 10 // under the terms of the GNU General Public License version 3 as published by 11 // the Free Software Foundation. 12 // 13 // Force Field X is distributed in the hope that it will be useful, but WITHOUT 14 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 15 // FOR A PARTICULAR PURPOSE. See the GNU General Public License for more 16 // details. 17 // 18 // You should have received a copy of the GNU General Public License along with 19 // Force Field X; if not, write to the Free Software Foundation, Inc., 59 Temple 20 // Place, Suite 330, Boston, MA 02111-1307 USA 21 // 22 // Linking this library statically or dynamically with other modules is making a 23 // combined work based on this library. Thus, the terms and conditions of the 24 // GNU General Public License cover the whole combination. 25 // 26 // As a special exception, the copyright holders of this library give you 27 // permission to link this library with independent modules to produce an 28 // executable, regardless of the license terms of these independent modules, and 29 // to copy and distribute the resulting executable under terms of your choice, 30 // provided that you also meet, for each linked independent module, the terms 31 // and conditions of the license of that module. An independent module is a 32 // module which is not derived from or based on this library. If you modify this 33 // library, you may extend this exception to your version of the library, but 34 // you are not obligated to do so. If you do not wish to do so, delete this 35 // exception statement from your version. 36 // 37 // ****************************************************************************** 38 package ffx.potential.groovy; 39 40 import static org.junit.Assert.assertEquals; 41 import static org.junit.Assert.assertNotNull; 42 import static org.junit.Assert.assertTrue; 43 44 import ffx.potential.parameters.BioType; 45 import ffx.potential.utils.PotentialTest; 46 import java.util.List; 47 import org.junit.Test; 48 49 /** Test the Biotype script. */ 50 public class BiotypeTest extends PotentialTest { 51 52 @Test 53 public void testBiotype() { 54 // Set-up the input arguments for the Biotype script. 55 String[] args = {getResourcePath("acetanilide.xyz")}; 56 binding.setVariable("args", args); 57 58 // Create and evaluate the script. 59 Biotype biotype = new Biotype(binding).run(); 60 potentialScript = biotype; 61 62 // Check the Biotype results. 63 List<BioType> bioTypes = biotype.getBioTypes(); 64 assertNotNull(bioTypes); 65 assertEquals(19, bioTypes.size()); 66 BioType bioType = bioTypes.get(0); 67 assertTrue( 68 " Check the value of the first Biotype.", 69 bioType.toString().trim().equalsIgnoreCase( 70 "biotype 1 C \"ace \" 405 C C N")); 71 72 // Check that the bioTypes variable is available via the Binding. 73 assertEquals(bioTypes, binding.getVariable("bioTypes")); 74 } 75 76 @Test 77 public void testBiotypeHelp() { 78 // Set-up the input arguments for the Biotype script. 79 String[] args = {"-h"}; 80 binding.setVariable("args", args); 81 82 // Create and evaluate the script. 83 Biotype biotype = new Biotype(binding).run(); 84 potentialScript = biotype; 85 } 86 }