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1   // ******************************************************************************
2   //
3   // Title:       Force Field X.
4   // Description: Force Field X - Software for Molecular Biophysics.
5   // Copyright:   Copyright (c) Michael J. Schnieders 2001-2024.
6   //
7   // This file is part of Force Field X.
8   //
9   // Force Field X is free software; you can redistribute it and/or modify it
10  // under the terms of the GNU General Public License version 3 as published by
11  // the Free Software Foundation.
12  //
13  // Force Field X is distributed in the hope that it will be useful, but WITHOUT
14  // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
15  // FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
16  // details.
17  //
18  // You should have received a copy of the GNU General Public License along with
19  // Force Field X; if not, write to the Free Software Foundation, Inc., 59 Temple
20  // Place, Suite 330, Boston, MA 02111-1307 USA
21  //
22  // Linking this library statically or dynamically with other modules is making a
23  // combined work based on this library. Thus, the terms and conditions of the
24  // GNU General Public License cover the whole combination.
25  //
26  // As a special exception, the copyright holders of this library give you
27  // permission to link this library with independent modules to produce an
28  // executable, regardless of the license terms of these independent modules, and
29  // to copy and distribute the resulting executable under terms of your choice,
30  // provided that you also meet, for each linked independent module, the terms
31  // and conditions of the license of that module. An independent module is a
32  // module which is not derived from or based on this library. If you modify this
33  // library, you may extend this exception to your version of the library, but
34  // you are not obligated to do so. If you do not wish to do so, delete this
35  // exception statement from your version.
36  //
37  // ******************************************************************************
38  package ffx.numerics.fft;
39  
40  import static org.junit.Assert.assertEquals;
41  
42  import java.util.Arrays;
43  import java.util.Collection;
44  import java.util.Random;
45  
46  import ffx.utilities.FFXTest;
47  import org.junit.Before;
48  import org.junit.Test;
49  import org.junit.runner.RunWith;
50  import org.junit.runners.Parameterized;
51  import org.junit.runners.Parameterized.Parameters;
52  
53  /** @author Michael J. Schnieders */
54  @RunWith(Parameterized.class)
55  public class Complex3DTest extends FFXTest {
56  
57    private final String info;
58    private final int nx;
59    private final int ny;
60    private final int nz;
61    private final int tot;
62    private final double[] data;
63    private final double[] expected;
64    private final double[] recip;
65    private final double tolerance = 1.0e-14;
66  
67    public Complex3DTest(String info, int nx, int ny, int nz) {
68      this.info = info;
69      this.nx = nx;
70      this.ny = ny;
71      this.nz = nz;
72      tot = nx * ny * nz;
73      data = new double[tot * 2];
74      expected = new double[tot];
75      recip = new double[tot];
76    }
77  
78    @Parameters
79    public static Collection<Object[]> data() {
80      return Arrays.asList(
81          new Object[][] {
82            {"Test nx=32, ny=32, nz=32}", 32, 32, 32}, {"Test nx=32, ny=45, nz=21}", 32, 45, 21}
83          });
84    }
85  
86    @Before
87    public void setUp() {
88      Random random = new Random();
89      for (int i = 0; i < tot; i++) {
90        int index = i * 2;
91        double r = random.nextDouble();
92        data[index] = r;
93        expected[i] = r;
94        recip[i] = 1.0e0;
95      }
96    }
97  
98    /** Test of convolution method, of class Complex3D. */
99    @Test
100   public void testConvolution() {
101     Complex3D complex3D = new Complex3D(nx, ny, nz);
102     complex3D.setRecip(recip);
103     complex3D.convolution(data);
104     for (int i = 0; i < tot; i++) {
105       int index = i * 2;
106       double actual = data[index] / tot;
107       double orig = expected[i];
108       assertEquals(info, orig, actual, tolerance);
109     }
110   }
111 
112   /** Test of the fft and ifft methods, of class Complex3D. */
113   @Test
114   public void testFft() {
115     Complex3D complex3D = new Complex3D(nx, ny, nz);
116     complex3D.fft(data);
117     complex3D.ifft(data);
118     for (int i = 0; i < tot; i++) {
119       int index = i * 2;
120       double actual = data[index] / tot;
121       double orig = expected[i];
122       assertEquals(info, orig, actual, tolerance);
123     }
124   }
125 }