Package ffx.xray.parsers

Class CCP4MapWriter

java.lang.Object

ffx.xray.parsers.CCP4MapWriter

public class CCP4MapWriter
extends Object

CCP4MapWriter class.

Since:

1.0

Author:

Timothy D. Fenn

See Also:

• • CCP4 map format
  • CCP4 library documentation
  • CCP4 map format
  • CCP4 library documentation

Constructor Summary

Constructors

Constructor	Description
CCP4MapWriter(int orix, int oriy, int oriz, int extx, int exty, int extz, int nx, int ny, int nz, Crystal crystal, String filename)	Constructor for CCP4MapWriter.
CCP4MapWriter(int extx, int exty, int extz, Crystal crystal, String filename)	construct mapwriter object

Method Summary

Modifier and Type	Method	Description
void	setStride(int stride)	Set the stepping across the array (e.g. 2 if data is separated by 1 space)
void	write(double[] data)	Write data to file (does not normalize).
void	write(double[] data, boolean norm)	write data to file, does not normalize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CCP4MapWriter

public CCP4MapWriter(int extx,
 int exty,
 int extz,
 Crystal crystal,
 String filename)

construct mapwriter object

Parameters:

extx - slices in x

exty - slices in y

extz - slices in z

crystal - Crystal object

filename - output filename

CCP4MapWriter

public CCP4MapWriter(int orix,
 int oriy,
 int oriz,
 int extx,
 int exty,
 int extz,
 int nx,
 int ny,
 int nz,
 Crystal crystal,
 String filename)

Constructor for CCP4MapWriter.

Parameters:

orix - an int.

oriy - an int.

oriz - an int.

extx - an int.

exty - an int.

extz - an int.

nx - an int.

ny - an int.

nz - an int.

crystal - a Crystal object.

filename - a String object.

Method Details

setStride

public void setStride(int stride)

Set the stepping across the array (e.g. 2 if data is separated by 1 space)

Parameters:

stride - the step size desired

write

public void write(double[] data)

Write data to file (does not normalize).

Parameters:

data - map data to write out

write

public void write(double[] data,
 boolean norm)

write data to file, does not normalize

Parameters:

data - map data to write out

norm - should the data be normalized by mean/sd?