Package ffx.xray

Class RefinementModel

java.lang.Object

ffx.xray.RefinementModel

public class RefinementModel
extends Object

RefinementModel class.

Since:

1.0

Author:

Timothy D. Fenn

Constructor Summary

Constructors

Constructor	Description
RefinementModel(MolecularAssembly[] molecularAssemblies)	Constructor for RefinementModel.
RefinementModel(MolecularAssembly[] molecularAssemblies, boolean refineMolOcc)	Constructor for RefinementModel.

Method Summary

Modifier and Type	Method	Description
Atom[]	getActiveAtomArray()	Getter for the field activeAtomArray.
List<Atom>	getActiveAtomList()	Getter for the field activeAtomList.
List<List<Molecule>>	getAltMolecules()	Getter for the field altMolecules.
List<List<Residue>>	getAltResidues()	Getter for the field altResidues.
Atom[]	getTotalAtomArray()	Getter for the field totalAtomArray.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RefinementModel

public RefinementModel(MolecularAssembly[] molecularAssemblies)

Constructor for RefinementModel.

Parameters:

molecularAssemblies - an array of MolecularAssembly objects.

RefinementModel

public RefinementModel(MolecularAssembly[] molecularAssemblies,
 boolean refineMolOcc)

Constructor for RefinementModel.

Parameters:

molecularAssemblies - an array of MolecularAssembly objects.

refineMolOcc - a boolean.

Method Details

getActiveAtomArray

public Atom[] getActiveAtomArray()

Getter for the field activeAtomArray.

Returns:

the activeAtomArray

getActiveAtomList

public List<Atom> getActiveAtomList()

Getter for the field activeAtomList.

Returns:

the activeAtomList

getAltMolecules

public List<List<Molecule>> getAltMolecules()

Getter for the field altMolecules.

Returns:

the altMolecules

getAltResidues

public List<List<Residue>> getAltResidues()

Getter for the field altResidues.

Returns:

the altResidues

getTotalAtomArray

public Atom[] getTotalAtomArray()

Getter for the field totalAtomArray.

Returns:

the totalAtomArray