Uses of Enum Class
ffx.potential.parsers.PDBFilter.PDBFileStandard
Packages that use PDBFilter.PDBFileStandard
Package
Description
The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions,
etc.
The Parsers package handles reading/writing files to/from the internal data structure.
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Uses of PDBFilter.PDBFileStandard in ffx.potential.bonded
Methods in ffx.potential.bonded with parameters of type PDBFilter.PDBFileStandardModifier and TypeMethodDescriptionPolymerUtils.assignAtomTypes
(MolecularAssembly molecularAssembly, PDBFilter.PDBFileStandard fileStandard) Assign force field atoms types to common chemistries using "biotype" records.static void
NamingUtils.checkHydrogenAtomNames
(Residue residue, PDBFilter.PDBFileStandard fileStandard) Ensures proper naming of hydrogen according to latest PDB format. -
Uses of PDBFilter.PDBFileStandard in ffx.potential.parsers
Methods in ffx.potential.parsers that return PDBFilter.PDBFileStandardModifier and TypeMethodDescriptionstatic PDBFilter.PDBFileStandard
Returns the enum constant of this class with the specified name.static PDBFilter.PDBFileStandard[]
PDBFilter.PDBFileStandard.values()
Returns an array containing the constants of this enum class, in the order they are declared.