Package ffx.potential.commands

Class SaveAsPDB

java.lang.Object

ffx.utilities.FFXCommand

ffx.potential.cli.PotentialCommand

ffx.potential.commands.SaveAsPDB

public class SaveAsPDB
extends PotentialCommand

Save the system as a PDB file. Usage: ffxc SaveAsPDB [options] <filename>

Field Summary

Fields inherited from class ffx.potential.cli.PotentialCommand

activeAssembly, baseDir, potentialFunctions

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
SaveAsPDB()
SaveAsPDB(FFXBinding binding)
SaveAsPDB(String[] args)

Method Summary

Modifier and Type	Method	Description
SaveAsPDB	run()	Execute this Command.

Methods inherited from class ffx.potential.cli.PotentialCommand

destroyPotentials, getActiveAssemblies, getActiveAssembly, getBaseDirString, getPotentials, init, setActiveAssembly

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SaveAsPDB

public SaveAsPDB()

SaveAsPDB

public SaveAsPDB(FFXBinding binding)

SaveAsPDB

public SaveAsPDB(String[] args)

Method Details

run

public SaveAsPDB run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.