Package ffx.potential.commands

Class NucleicAcidAnalysis

java.lang.Object

ffx.utilities.FFXCommand

ffx.potential.cli.PotentialCommand

ffx.potential.commands.NucleicAcidAnalysis

public class NucleicAcidAnalysis
extends PotentialCommand

Calculates nucleic acid torsions as well as information regarding the sugar pucker. Usage: ffxc NucleicAcidAnalysis [options] <filename>

Field Summary

Fields inherited from class ffx.potential.cli.PotentialCommand

activeAssembly, baseDir, potentialFunctions

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
NucleicAcidAnalysis()
NucleicAcidAnalysis(FFXBinding binding)
NucleicAcidAnalysis(String[] args)

Method Summary

Modifier and Type	Method	Description
NucleicAcidAnalysis	run()	Execute this Command.

Methods inherited from class ffx.potential.cli.PotentialCommand

destroyPotentials, getActiveAssemblies, getActiveAssembly, getBaseDirString, getPotentials, init, setActiveAssembly

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NucleicAcidAnalysis

public NucleicAcidAnalysis()

NucleicAcidAnalysis

public NucleicAcidAnalysis(FFXBinding binding)

NucleicAcidAnalysis

public NucleicAcidAnalysis(String[] args)

Method Details

run

public NucleicAcidAnalysis run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.