Package ffx.potential.commands

Class FeatureMap

java.lang.Object

ffx.utilities.FFXCommand

ffx.potential.cli.PotentialCommand

ffx.potential.commands.FeatureMap

public class FeatureMap
extends PotentialCommand

Create a Feature Map for a given protein structure.

Usage: ffxc FeatureMap [options] <pdb/xyz> <variants.csv> [ddgFile]

Field Summary

Fields inherited from class ffx.potential.cli.PotentialCommand

activeAssembly, baseDir, potentialFunctions

Fields inherited from class ffx.utilities.FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
FeatureMap()
FeatureMap(FFXBinding binding)
FeatureMap(String[] args)

Method Summary

Modifier and Type	Method	Description
FeatureMap	run()	Execute this Command.

Methods inherited from class ffx.potential.cli.PotentialCommand

createOutputFile, destroyPotentials, getActiveAssemblies, getActiveAssembly, getActiveAssembly, getBaseDirString, getPotentials, getPotentialsFromAssemblies, init, parseFilePath, saveByExtension, saveByExtension, saveByOriginalExtension, saveByOriginalExtension, setActiveAssembly

Methods inherited from class ffx.utilities.FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FeatureMap

public FeatureMap()

FeatureMap

public FeatureMap(FFXBinding binding)

FeatureMap

public FeatureMap(String[] args)

Method Details

run

public FeatureMap run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.