Class Biotype

java.lang.Object

ffx.utilities.FFXCommand

ffx.potential.cli.PotentialCommand

ffx.potential.commands.Biotype

public class Biotype
extends PotentialCommand

Print out Biotype records for the atoms in an XYZ file. Usage: ffxc Biotype <filename>

Field Summary

Fields inherited from class PotentialCommand

activeAssembly, baseDir, potentialFunctions

Fields inherited from class FFXCommand

args, binding, color, help, logger, parseResult, version

Constructor Summary

Constructors

Constructor	Description
Biotype()
Biotype(FFXBinding binding)
Biotype(String[] args)

Method Summary

Modifier and Type	Method	Description
List<BioType>	getBioTypes()	Get the list of created Biotype records.
Biotype	run()	Execute this Command.

Methods inherited from class PotentialCommand

createOutputFile, destroyPotentials, getActiveAssemblies, getActiveAssembly, getActiveAssembly, getBaseDirString, getPotentials, getPotentialsFromAssemblies, init, parseFilePath, saveByExtension, saveByExtension, saveByOriginalExtension, saveByOriginalExtension, setActiveAssembly

Methods inherited from class FFXCommand

getCommand, helpString, listCommands, setBinding

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Biotype

public Biotype()

Biotype

public Biotype(FFXBinding binding)

Biotype

public Biotype(String[] args)

Method Details

getBioTypes

public List<BioType> getBioTypes()

Get the list of created Biotype records.

run

public Biotype run()

Description copied from class: FFXCommand

Execute this Command.

Overrides:

run in class FFXCommand

Returns:

The current FFXCommand.